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aptg  

Automatic Phylogenetic Tree Generator
View on CRAN: Click here


Download and install aptg package within the R console
Install from CRAN:
install.packages("aptg")

Install from Github:
library("remotes")
install_github("cran/aptg")

Install by package version:
library("remotes")
install_version("aptg", "0.4.0")



Attach the package and use:
library("aptg")
Maintained by
Christophe Benjamin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-07-09
Latest Update: 2026-07-19
Description:
Generates phylogenetic trees and distance matrices from a list of taxon names, or from a higher taxon expanded down to a chosen lower rank. Trees are obtained as induced subtrees of the Open Tree of Life synthetic tree using the 'rotl' package (Michonneau, Brown and Winter, 2016, <doi:10.1111/2041-210X.12593>). Expansion of a higher taxon to its descendants uses 'taxize' (Chamberlain and Szocs, 2013, <doi:10.12688/f1000research.2-191.v2>).
How to cite:
Christophe Benjamin (2026). aptg: Automatic Phylogenetic Tree Generator. R package version 0.4.0, https://cran.r-project.org/web/packages/aptg. Accessed 03 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:18), 0.1.0 (2017-03-31 08:12), 0.1.1 (2021-01-10 16:20)
Other packages that cited aptg R package
View aptg citation profile
Other R packages that aptg depends, imports, suggests or enhances
Complete documentation for aptg
Functions, R codes and Examples using the aptg R package
Full aptg package functions and examples
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