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aphylo  

Statistical Inference and Prediction of Annotations in Phylogenetic Trees
View on CRAN: Click here


Download and install aphylo package within the R console
Install from CRAN:
install.packages("aphylo")

Install from Github:
library("remotes")
install_github("cran/aphylo")

Install by package version:
library("remotes")
install_version("aphylo", "0.3-6")



Attach the package and use:
library("aphylo")
Maintained by
George Vega Yon
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-01-21
Latest Update:
Description:
Implements a parsimonious evolutionary model to analyze and predict gene-functional annotations in phylogenetic trees as described in Vega Yon et al. (2021) . Focusing on computational efficiency, 'aphylo' makes it possible to estimate pooled phylogenetic models, including thousands (hundreds) of annotations (trees) in the same run. The package also provides the tools for visualization of annotated phylogenies, calculation of posterior probabilities (prediction) and goodness-of-fit assessment featured in Vega Yon et al. (2021).
How to cite:
George Vega Yon (2022). aphylo: Statistical Inference and Prediction of Annotations in Phylogenetic Trees. R package version 0.3-6, https://cran.r-project.org/web/packages/aphylo. Accessed 05 Jun. 2026.
Previous versions and publish date:
0.2-1 (2022-01-21 20:12), 0.3-1 (2022-12-20 18:30), 0.3-2 (2022-12-21 01:10), 0.3-3 (2023-09-07 20:40), 0.3-4 (2024-12-04 00:00), 0.3-5 (2025-11-20 11:20)
Other packages that cited aphylo R package
View aphylo citation profile
Other R packages that aphylo depends, imports, suggests or enhances
Complete documentation for aphylo
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