Other packages > Find by keyword >

aphylo  

Statistical Inference and Prediction of Annotations in Phylogenetic Trees
View on CRAN: Click here


Download and install aphylo package within the R console
Install from CRAN:
install.packages("aphylo")

Install from Github:
library("remotes")
install_github("cran/aphylo")

Install by package version:
library("remotes")
install_version("aphylo", "0.3-6")



Attach the package and use:
library("aphylo")
Maintained by
George Vega Yon
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-01-21
Latest Update:
Description:
Implements a parsimonious evolutionary model to analyze and predict gene-functional annotations in phylogenetic trees as described in Vega Yon et al. (2021) . Focusing on computational efficiency, 'aphylo' makes it possible to estimate pooled phylogenetic models, including thousands (hundreds) of annotations (trees) in the same run. The package also provides the tools for visualization of annotated phylogenies, calculation of posterior probabilities (prediction) and goodness-of-fit assessment featured in Vega Yon et al. (2021).
How to cite:
George Vega Yon (2022). aphylo: Statistical Inference and Prediction of Annotations in Phylogenetic Trees. R package version 0.3-6, https://cran.r-project.org/web/packages/aphylo. Accessed 06 Mar. 2026.
Previous versions and publish date:
0.2-1 (2022-01-21 20:12), 0.3-1 (2022-12-20 18:30), 0.3-2 (2022-12-21 01:10), 0.3-3 (2023-09-07 20:40), 0.3-4 (2024-12-04 00:00), 0.3-5 (2025-11-20 11:20)
Other packages that cited aphylo R package
View aphylo citation profile
Other R packages that aphylo depends, imports, suggests or enhances
Complete documentation for aphylo
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  
DatabionicSwarm  
Swarm Intelligence for Self-Organized Clustering
Algorithms implementing populations of agents that interact with one another and sense their environ ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  
solitude  
An Implementation of Isolation Forest
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,376

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA