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ambiR  

Calculate AZTI’s Marine Biotic Index
View on CRAN: Click here


Download and install ambiR package within the R console
Install from CRAN:
install.packages("ambiR")

Install from Github:
library("remotes")
install_github("cran/ambiR")

Install by package version:
library("remotes")
install_version("ambiR", "0.1.1")



Attach the package and use:
library("ambiR")
Maintained by
Ciarán J. Murray
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-12-19
Latest Update: 2025-12-19
Description:
Calculate AZTI’s Marine Biotic Index - AMBI. The included list of benthic fauna species according to their sensitivity to pollution. Matching species in sample data to the list allows the calculation of fractions of individuals in the different sensitivity categories and thereafter the AMBI index. The Shannon Diversity Index H' and the Danish benthic fauna quality index DKI (Dansk Kvalitetsindeks) can also be calculated, as well as the multivariate M-AMBI index. Borja, A., Franco, J. ,Pérez, V. (2000) "A marine biotic index to establish the ecological quality of soft bottom benthos within European estuarine and coastal environments" <doi:10.1016/S0025-326X(00)00061-8>.
How to cite:
Ciarán J. Murray (2025). ambiR: Calculate AZTI’s Marine Biotic Index. R package version 0.1.1, https://cran.r-project.org/web/packages/ambiR. Accessed 04 Jul. 2026.
Previous versions and publish date:
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Complete documentation for ambiR
Functions, R codes and Examples using the ambiR R package
Full ambiR package functions and examples
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