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admixr  

An Interface for Running 'ADMIXTOOLS' Analyses
View on CRAN: Click here


Download and install admixr package within the R console
Install from CRAN:
install.packages("admixr")

Install from Github:
library("remotes")
install_github("cran/admixr")

Install by package version:
library("remotes")
install_version("admixr", "0.9.1")



Attach the package and use:
library("admixr")
Maintained by
Martin Petr
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-03
Latest Update: 2020-07-03
Description:
An interface for performing all stages of 'ADMIXTOOLS' analyses () entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.
How to cite:
Martin Petr (2020). admixr: An Interface for Running 'ADMIXTOOLS' Analyses. R package version 0.9.1, https://cran.r-project.org/web/packages/admixr. Accessed 22 Dec. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited admixr R package
View admixr citation profile
Other R packages that admixr depends, imports, suggests or enhances
Complete documentation for admixr
Functions, R codes and Examples using the admixr R package
Some associated functions: count_snps . download_data . eigenstrat . f4ratio . filter_bed . keep_transitions . loginfo . merge_eigenstrat . pipe . print.EIGENSTRAT . print.admixr_result . qpAdm . qpAdm_filter . qpAdm_rotation . qpWave . read_ind . read_output . relabel . reset . transversions_only . write_ind . 
Some associated R codes: config_files.R . eigenstrat.R . io.R . log.R . output_parsers.R . qpAdm.R . utils.R . wrappers.R . zzz.R .  Full admixr package functions and examples
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