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admixr
View on CRAN: Click
here
Download and install admixr package within the R console
Install from CRAN:
install.packages("admixr")
Install from Github:
library("remotes")
install_github("cran/admixr")
Install by package version:
library("remotes")
install_version("admixr", "0.9.1")
Attach the package and use:
library("admixr")
Maintained by
Martin Petr
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-03
Latest Update: 2020-07-03
Description:
An interface for performing all stages of 'ADMIXTOOLS' analyses
() entirely from R. Wrapper functions
(D, f4, f3, etc.) completely automate the generation of intermediate
configuration files, run 'ADMIXTOOLS' programs on the command-line, and
parse output files to extract values of interest. This allows users to focus
on the analysis itself instead of worrying about low-level technical details.
A set of complementary functions for processing and filtering of data in
the 'EIGENSTRAT' format is also provided.
How to cite:
Martin Petr (2020). admixr: An Interface for Running 'ADMIXTOOLS' Analyses. R package version 0.9.1, https://cran.r-project.org/web/packages/admixr. Accessed 06 Nov. 2024.
Previous versions and publish date:
No previous versions
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Other R packages that admixr depends,
imports, suggests or enhances
Complete documentation for admixr
Functions, R codes and Examples using
the admixr R package
Some associated functions: count_snps . download_data . eigenstrat . f4ratio . filter_bed . keep_transitions . loginfo . merge_eigenstrat . pipe . print.EIGENSTRAT . print.admixr_result . qpAdm . qpAdm_filter . qpAdm_rotation . qpWave . read_ind . read_output . relabel . reset . transversions_only . write_ind .
Some associated R codes: config_files.R . eigenstrat.R . io.R . log.R . output_parsers.R . qpAdm.R . utils.R . wrappers.R . zzz.R . Full admixr package functions and examples
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