Other packages > Find by keyword >

adjclust  

Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix
View on CRAN: Click here


Download and install adjclust package within the R console
Install from CRAN:
install.packages("adjclust")

Install from Github:
library("remotes")
install_github("cran/adjclust")

Install by package version:
library("remotes")
install_version("adjclust", "0.6.11")



Attach the package and use:
library("adjclust")
Maintained by
Pierre Neuvial
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-10-18
Latest Update: 2024-10-08
Description:
Implements a constrained version of hierarchical agglomerative clustering, in which each observation is associated to a position, and only adjacent clusters can be merged. Typical application fields in bioinformatics include Genome-Wide Association Studies or Hi-C data analysis, where the similarity between items is a decreasing function of their genomic distance. Taking advantage of this feature, the implemented algorithm is time and memory efficient. This algorithm is described in Ambroise et al (2019) .
How to cite:
Pierre Neuvial (2017). adjclust: Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix. R package version 0.6.11, https://cran.r-project.org/web/packages/adjclust. Accessed 05 Jun. 2026.
Previous versions and publish date:
0.5.2 (2017-10-18 20:17), 0.5.6 (2018-02-08 20:44), 0.5.7 (2018-09-26 23:00), 0.5.9 (2019-12-10 14:30), 0.5.99 (2020-06-18 12:30), 0.6.3 (2021-07-26 21:30), 0.6.4 (2022-03-31 16:20), 0.6.5 (2022-08-18 16:30), 0.6.6 (2022-09-15 00:00), 0.6.7 (2023-04-27 20:20), 0.6.8 (2024-01-13 17:10), 0.6.9 (2024-02-08 09:50), 0.6.10 (2024-10-08 10:10)
Other packages that cited adjclust R package
View adjclust citation profile
Other R packages that adjclust depends, imports, suggests or enhances
Complete documentation for adjclust
Functions, R codes and Examples using the adjclust R package
Some associated functions: adjClust . chac . hicClust . plotSim . select . snpClust . 
Some associated R codes: RcppExports.R . adjclust.R . buildHeap.R . chac.R . helpers.R . hicClust.R . plotSim.R . snpClust.R . zzzz.R .  Full adjclust package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ibb  
R Wrapper for Istanbul Municipality Open Data Portal
Call wrappers for Istanbul Metropolitan Municipality's Open Data Portal (Turkish: Istanbul B ...
Download / Learn more Package Citations See dependency  
crossurr  
Cross-Fitting for Doubly Robust Evaluation of High-Dimensional Surrogate Markers
Doubly robust methods for evaluating surrogate markers as outlined in: Agniel D, Hejblum BP, Thiebau ...
Download / Learn more Package Citations See dependency  
msm  
Multi-State Markov and Hidden Markov Models in Continuous Time
Functions for fitting continuous-time Markov and hidden Markov multi-state models to longitudinal d ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
envirem  
Generation of ENVIREM Variables
Generation of bioclimatic rasters that are complementary to the typical 19 bioclim variables. ...
Download / Learn more Package Citations See dependency  

27,268

R Packages

233,548

Dependencies

72,590

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA