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adiv
View on CRAN: Click
here
Download and install adiv package within the R console
Install from CRAN:
install.packages("adiv")
Install from Github:
library("remotes")
install_github("cran/adiv")
Install by package version:
library("remotes")
install_version("adiv", "2.2.1")
Attach the package and use:
library("adiv")
Maintained by
Sandrine Pavoine
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-07-19
Latest Update: 2024-02-19
Description:
Functions, data sets and examples for the calculation of various indices of biodiversity including species, functional and phylogenetic diversity. Part of the indices are expressed in terms of equivalent numbers of species. The package also provides ways to partition biodiversity across spatial or temporal scales (alpha, beta, gamma diversities). In addition to the quantification of biodiversity, ordination approaches are available which rely on diversity indices and allow the detailed identification of species, functional or phylogenetic differences between communities.
How to cite:
Sandrine Pavoine (2017). adiv: Analysis of Diversity. R package version 2.2.1, https://cran.r-project.org/web/packages/adiv. Accessed 21 Nov. 2024.
Previous versions and publish date:
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Complete documentation for adiv
Functions, R codes and Examples using
the adiv R package
Some associated functions: CF . DP . EH . EqRao . FPdivparam . FunImbalance . K . PADDis . QE . RDMCCP16 . RP15EI . RP15JVS . RPP16EE . Rentropy . RutorGlacier . abgdivparam . abgevodivparam . adiv-package . aptree . batcomm . betaTreeUniqueness . betaUniqueness . betastat . birdData . crossdpcoa . dbMANOVAspecies . decdiv . dislptransport . dissABC . dissRicotta . distMS . distinctAb . distinctDis . distinctTopo . distinctTree . distinctUltra . divparam . dsimcom . dspca . eveparam . evoCA . evoNSCA . evodiss . evodiss_family . evodiv . evodivparam . evoeveparam . evopca . evouniparam . generalized_Tradidiss . optimEH . orisaved . plot.phylo4d . qDT . qHdiv . randEH . rare_Rao . rlqESLTP . rockfish . speciesdiv . specieseve . treeUniqueness . twoHmax . uniqueness .
Some associated R codes: CFbinary.R . CFprop.R . DJac.R . DP.R . EH.R . EqRS.R . EqRSintra.R . EqRao.R . FPdivparam.R . FunImbalance.R . Jac.R . K.R . Kstar.R . Kw.R . PADDis.R . QE.R . Rentropy.R . SQ.R . abgaptree.R . abgdivparam.R . abgevodivparam.R . apd.R . aptree.R . autoLab.R . barp4d.R . betaTreeUniqueness.R . betaUniqueness.R . betastatjac.R . betastatsor.R . checkphyloarg.R . crossdpcoa_maineffect.R . crossdpcoa_version1.R . crossdpcoa_version2.R . dbMANOVAspecies.R . dbMANOVAspecies_pairwise.R . decdiv.R . discomQE.R . dislptransport.R . dissABC.R . dissRicotta.R . distMS.R . distinctAb.R . distinctDis.R . distinctTopo.R . distinctTree.R . distinctUltra.R . divparam.R . dotp4d.R . dsimFun.R . dsimTaxo.R . dsimTree.R . dsimcom.R . dspca.R . eveparam.R . evoCA.R . evoNSCA.R . evodiss.R . evodiss_family.R . evodiss_ternaryplot.R . evodiv.R . evodivparam.R . evoeveparam.R . evopcachord.R . evopcahellinger.R . evouniparam.R . generalized_Tradidiss.R . gridp4d.R . multiCFbinary.R . multiCFprop.R . optimEH.R . orisaved.R . pIa.R . plot.FPdivparam.R . plot.abgdivparam.R . plot.abgevodivparam.R . plot.aptree.R . plot.decdiv.R . plot.divparam.R . plot.dspca.R . plot.eveparam.R . plot.evoCA.R . plot.evodivparam.R . plot.evoeveparam.R . plot.evouniparam.R . plot.phylo4d.R . plot.rlqESLTP.R . plot.rtestaptree.R . qDT.R . qHdiv.R . randEH.R . rare_Rao.R . rlqESLTP.R . rtestEqRS.R . rtestEqRSintra.R . rtestEqRao.R . rtestaptree.R . rtestdecdiv.R . rtestwapqe.R . speciesdiv.R . specieseve.R . summary.dbMANOVAspecies_pairwise.R . summary.rlqESLTP.R . tecAptree.R . treeUniqueness.R . twoHmax.R . uniqueness.R . wapqe.R . Full adiv package functions and examples
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