R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
adegenet
View on CRAN: Click
here
Download and install adegenet package within the R console
Install from CRAN:
install.packages("adegenet")
Install from Github:
library("remotes")
install_github("cran/adegenet")
Install by package version:
library("remotes")
install_version("adegenet", "2.1.10")
Attach the package and use:
library("adegenet")
Maintained by
Zhian N. Kamvar
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-04-11
Latest Update: 2023-01-26
Description:
Toolset for the exploration of genetic and genomic
data. Adegenet provides formal (S4) classes for storing and handling
various genetic data, including genetic markers with varying ploidy
and hierarchical population structure ('genind' class), alleles counts
by populations ('genpop'), and genome-wide SNP data ('genlight'). It
also implements original multivariate methods (DAPC, sPCA), graphics,
statistical tests, simulation tools, distance and similarity measures,
and several spatial methods. A range of both empirical and simulated
datasets is also provided to illustrate various methods.
How to cite:
Zhian N. Kamvar (2007). adegenet: Exploratory Analysis of Genetic and Genomic Data. R package version 2.1.10, https://cran.r-project.org/web/packages/adegenet. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0-0 (2007-04-11 10:21), 1.0-1 (2007-08-25 18:47), 1.0-2 (2007-09-10 10:14), 1.1-0 (2008-02-13 21:20), 1.1-1 (2008-04-18 20:17), 1.1-2 (2008-06-02 14:08), 1.2-0 (2008-07-08 19:14), 1.2-1 (2008-08-01 15:01), 1.2-2 (2008-12-19 11:55), 1.2-3 (2009-04-03 11:41), 1.2-4 (2010-04-16 18:03), 1.2-5 (2010-07-29 11:13), 1.2-6 (2010-09-22 21:36), 1.2-7 (2010-10-29 10:24), 1.2-8 (2010-11-04 20:54), 1.3-0 (2011-06-24 18:57), 1.3-1 (2011-09-14 21:21), 1.3-2 (2011-11-10 14:37), 1.3-3 (2011-12-23 06:54), 1.3-4 (2012-01-18 21:50), 1.3-5 (2012-11-01 21:38), 1.3-6 (2013-01-29 21:31), 1.3-7 (2013-04-06 21:51), 1.3-8 (2013-05-15 18:54), 1.3-9.1 (2013-08-09 14:23), 1.3-9.2 (2013-08-10 00:57), 1.3-9 (2013-06-04 18:08), 1.4-0 (2014-03-14 15:29), 1.4-1 (2014-03-18 18:20), 1.4-2 (2014-05-13 07:44), 2.0.0 (2015-07-07 15:44), 2.0.1 (2016-02-15 16:12), 2.1.0 (2017-10-12 21:20), 2.1.1 (2018-02-02 19:21), 2.1.2 (2020-01-20 20:50), 2.1.3 (2020-05-11 00:00), 2.1.4 (2021-07-17 20:00), 2.1.5 (2021-10-09 20:20), 2.1.6 (2022-05-15 22:40), 2.1.7 (2022-06-06 22:10), 2.1.8 (2022-10-02 17:30), 2.1.9 (2023-01-12 14:00)
Other packages that cited adegenet R package
View adegenet citation profile
Other R packages that adegenet depends,
imports, suggests or enhances
Complete documentation for adegenet
Functions, R codes and Examples using
the adegenet R package
Some associated functions: AIC.snapclust . AICc . BIC.snapclust . H3N2 . HWE . Hs . Hs.test . KIC . SNPbin . accessors . adegenet.package . as-methods . as.SNPbin . as.genlight . ascore . auxil . chooseCN . colorplot . compoplot . coords.monmonier . dapc . dapcGraphics . dapcIllus . df2genind . dist.genpop . doc_C_routines . eHGDP . export_to_mvmapper . fasta2DNAbin . fasta2genlight . find.clusters . gengraph . genind . genind2df . genind2genpop . genlight . genpop . glAux . glPca . glPlot . glSim . haploGen . hierarchy-methods . hybridize . hybridtoy . import2genind . inbreeding . isPoly . loadingplot . makefreq . microbov . minorAllele . monmonier . mutations . nancycats . new.genind . new.genpop . old2new . pairDist . population-methods . propShared . propTyped . read.PLINK . read.fstat . read.genepop . read.genetix . read.snp . read.structure . repool . rupica . scaleGen . selpopsize . seploc . seppop . seqTrack . sequences . servers . showmekittens . sim2pop . snapclust.choose.k . snapclust . snpposi . spca . spca.rtests . spcaIllus . spca_randtest . strata-methods . swallowtails . tab . truenames . virClasses . web . xvalDapc .
Some associated R codes: AIC.snapclust.R . AICc.snapclust.R . BIC.snapclust.R . HWE.R . Hs.R . KIC.snapclust.R . PCtest.R . SNPbin.R . accessors.R . adegenet.package.R . auxil.R . basicMethods.R . chooseCN.R . classes.R . colorplot.R . compoplot.R . constructors.R . coords.monmonier.R . dapc.R . datasets.R . dist.genlight.R . dist.genpop.R . doc_C_routines.R . export.R . export_to_mvmapper.R . find.clust.R . fstat.R . gengraph.R . genind2genpop.R . glFunctions.R . glHandle.R . glPlot.R . glSim.R . global_local_tests.R . gstat.randtest.R . handling.R . haploGen.R . haploPop.R . hierarchyMethods.R . hybridize.R . import.R . inbreeding.R . loadingplot.R . makefreq.R . minorAllele.R . monmonier.R . mutations.R . old2new.R . orthobasis.R . pairDist.R . propShared.R . propTyped.R . scale.R . seqTrack.R . sequences.R . servers.R . setAs.R . showmekittens.R . simOutbreak.R . snapclust.R . snapclust.choose.k.R . snpposi.R . snpzip.R . spca.R . spca_randtest.R . strataMethods.R . xvalDapc.R . zzz.R . Full adegenet package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
wordspace
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Stephanie Evert (view profile)
quickcode
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
elect
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Ardo van den Hout (view profile)
tropAlgebra
It includes functions like tropical addition, tropical multiplication for vectors and matrices. In t ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Muhammad Kashif Hanif (view profile)
composits
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Sevvandi Kandanaarachchi (view profile)
LOGANTree
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Qi Qin (view profile)