R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
adegenet
View on CRAN: Click
here
Download and install adegenet package within the R console
Install from CRAN:
install.packages("adegenet")
Install from Github:
library("remotes")
install_github("cran/adegenet")
Install by package version:
library("remotes")
install_version("adegenet", "2.1.11")
Attach the package and use:
library("adegenet")
Maintained by
Zhian N. Kamvar
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-04-11
Latest Update: 2023-01-26
Description:
Toolset for the exploration of genetic and genomic
data. Adegenet provides formal (S4) classes for storing and handling
various genetic data, including genetic markers with varying ploidy
and hierarchical population structure ('genind' class), alleles counts
by populations ('genpop'), and genome-wide SNP data ('genlight'). It
also implements original multivariate methods (DAPC, sPCA), graphics,
statistical tests, simulation tools, distance and similarity measures,
and several spatial methods. A range of both empirical and simulated
datasets is also provided to illustrate various methods.
How to cite:
Zhian N. Kamvar (2007). adegenet: Exploratory Analysis of Genetic and Genomic Data. R package version 2.1.11, https://cran.r-project.org/web/packages/adegenet. Accessed 18 Feb. 2025.
Previous versions and publish date:
1.0-0 (2007-04-11 10:21), 1.0-1 (2007-08-25 18:47), 1.0-2 (2007-09-10 10:14), 1.1-0 (2008-02-13 21:20), 1.1-1 (2008-04-18 20:17), 1.1-2 (2008-06-02 14:08), 1.2-0 (2008-07-08 19:14), 1.2-1 (2008-08-01 15:01), 1.2-2 (2008-12-19 11:55), 1.2-3 (2009-04-03 11:41), 1.2-4 (2010-04-16 18:03), 1.2-5 (2010-07-29 11:13), 1.2-6 (2010-09-22 21:36), 1.2-7 (2010-10-29 10:24), 1.2-8 (2010-11-04 20:54), 1.3-0 (2011-06-24 18:57), 1.3-1 (2011-09-14 21:21), 1.3-2 (2011-11-10 14:37), 1.3-3 (2011-12-23 06:54), 1.3-4 (2012-01-18 21:50), 1.3-5 (2012-11-01 21:38), 1.3-6 (2013-01-29 21:31), 1.3-7 (2013-04-06 21:51), 1.3-8 (2013-05-15 18:54), 1.3-9.1 (2013-08-09 14:23), 1.3-9.2 (2013-08-10 00:57), 1.3-9 (2013-06-04 18:08), 1.4-0 (2014-03-14 15:29), 1.4-1 (2014-03-18 18:20), 1.4-2 (2014-05-13 07:44), 2.0.0 (2015-07-07 15:44), 2.0.1 (2016-02-15 16:12), 2.1.0 (2017-10-12 21:20), 2.1.1 (2018-02-02 19:21), 2.1.2 (2020-01-20 20:50), 2.1.3 (2020-05-11 00:00), 2.1.4 (2021-07-17 20:00), 2.1.5 (2021-10-09 20:20), 2.1.6 (2022-05-15 22:40), 2.1.7 (2022-06-06 22:10), 2.1.8 (2022-10-02 17:30), 2.1.9 (2023-01-12 14:00), 2.1.10 (2023-01-26 23:00)
Other packages that cited adegenet R package
View adegenet citation profile
Other R packages that adegenet depends,
imports, suggests or enhances
Complete documentation for adegenet
Functions, R codes and Examples using
the adegenet R package
Some associated functions: AIC.snapclust . AICc . BIC.snapclust . H3N2 . HWE . Hs . Hs.test . KIC . SNPbin . accessors . adegenet.package . as-methods . as.SNPbin . as.genlight . ascore . auxil . chooseCN . colorplot . compoplot . coords.monmonier . dapc . dapcGraphics . dapcIllus . df2genind . dist.genpop . doc_C_routines . eHGDP . export_to_mvmapper . fasta2DNAbin . fasta2genlight . find.clusters . gengraph . genind . genind2df . genind2genpop . genlight . genpop . glAux . glPca . glPlot . glSim . haploGen . hierarchy-methods . hybridize . hybridtoy . import2genind . inbreeding . isPoly . loadingplot . makefreq . microbov . minorAllele . monmonier . mutations . nancycats . new.genind . new.genpop . old2new . pairDist . population-methods . propShared . propTyped . read.PLINK . read.fstat . read.genepop . read.genetix . read.snp . read.structure . repool . rupica . scaleGen . selpopsize . seploc . seppop . seqTrack . sequences . servers . showmekittens . sim2pop . snapclust.choose.k . snapclust . snpposi . spca . spca.rtests . spcaIllus . spca_randtest . strata-methods . swallowtails . tab . truenames . virClasses . web . xvalDapc .
Some associated R codes: AIC.snapclust.R . AICc.snapclust.R . BIC.snapclust.R . HWE.R . Hs.R . KIC.snapclust.R . PCtest.R . SNPbin.R . accessors.R . adegenet.package.R . auxil.R . basicMethods.R . chooseCN.R . classes.R . colorplot.R . compoplot.R . constructors.R . coords.monmonier.R . dapc.R . datasets.R . dist.genlight.R . dist.genpop.R . doc_C_routines.R . export.R . export_to_mvmapper.R . find.clust.R . fstat.R . gengraph.R . genind2genpop.R . glFunctions.R . glHandle.R . glPlot.R . glSim.R . global_local_tests.R . gstat.randtest.R . handling.R . haploGen.R . haploPop.R . hierarchyMethods.R . hybridize.R . import.R . inbreeding.R . loadingplot.R . makefreq.R . minorAllele.R . monmonier.R . mutations.R . old2new.R . orthobasis.R . pairDist.R . propShared.R . propTyped.R . scale.R . seqTrack.R . sequences.R . servers.R . setAs.R . showmekittens.R . simOutbreak.R . snapclust.R . snapclust.choose.k.R . snpposi.R . snpzip.R . spca.R . spca_randtest.R . strataMethods.R . xvalDapc.R . zzz.R . Full adegenet package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
ppmf
Implements data processing described in to align modern differentially ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Christopher T. Kenny (view profile)
OptGS
Optimal group-sequential designs minimise some function of the expected and maximum sample size whil ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: James Wason (view profile)
fclust
Algorithms for fuzzy clustering, cluster validity indices and plots for cluster validity and visuali ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Paolo Giordani (view profile)
RobustBayesianCopas
Fits the robust Bayesian Copas (RBC) selection model of Bai et al. (2020) for cor ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Ray Bai (view profile)
clustMixType
Functions to perform k-prototypes partitioning clustering for
mixed variable-type data according to ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Gero Szepannek (view profile)
MOSS
High dimensionality, noise and heterogeneity among
samples and features challenge the omic integrat ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Agustin Gonzalez-Reymundez (view profile)
23,712
R Packages
205,795
Dependencies
64,332
Author Associations
23,631
Publication Badges
