Other packages > Find by keyword >

adegenet  

Exploratory Analysis of Genetic and Genomic Data
View on CRAN: Click here


Download and install adegenet package within the R console
Install from CRAN:
install.packages("adegenet")

Install from Github:
library("remotes")
install_github("cran/adegenet")

Install by package version:
library("remotes")
install_version("adegenet", "2.1.11")



Attach the package and use:
library("adegenet")
Maintained by
Zhian N. Kamvar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2007-04-11
Latest Update: 2025-02-06
Description:
Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
How to cite:
Zhian N. Kamvar (2007). adegenet: Exploratory Analysis of Genetic and Genomic Data. R package version 2.1.11, https://cran.r-project.org/web/packages/adegenet. Accessed 25 Jun. 2026.
Previous versions and publish date:
1.0-0 (2007-04-11 10:21), 1.0-1 (2007-08-25 18:47), 1.0-2 (2007-09-10 10:14), 1.1-0 (2008-02-13 21:20), 1.1-1 (2008-04-18 20:17), 1.1-2 (2008-06-02 14:08), 1.2-0 (2008-07-08 19:14), 1.2-1 (2008-08-01 15:01), 1.2-2 (2008-12-19 11:55), 1.2-3 (2009-04-03 11:41), 1.2-4 (2010-04-16 18:03), 1.2-5 (2010-07-29 11:13), 1.2-6 (2010-09-22 21:36), 1.2-7 (2010-10-29 10:24), 1.2-8 (2010-11-04 20:54), 1.3-0 (2011-06-24 18:57), 1.3-1 (2011-09-14 21:21), 1.3-2 (2011-11-10 14:37), 1.3-3 (2011-12-23 06:54), 1.3-4 (2012-01-18 21:50), 1.3-5 (2012-11-01 21:38), 1.3-6 (2013-01-29 21:31), 1.3-7 (2013-04-06 21:51), 1.3-8 (2013-05-15 18:54), 1.3-9.1 (2013-08-09 14:23), 1.3-9.2 (2013-08-10 00:57), 1.3-9 (2013-06-04 18:08), 1.4-0 (2014-03-14 15:29), 1.4-1 (2014-03-18 18:20), 1.4-2 (2014-05-13 07:44), 2.0.0 (2015-07-07 15:44), 2.0.1 (2016-02-15 16:12), 2.1.0 (2017-10-12 21:20), 2.1.1 (2018-02-02 19:21), 2.1.2 (2020-01-20 20:50), 2.1.3 (2020-05-11 00:00), 2.1.4 (2021-07-17 20:00), 2.1.5 (2021-10-09 20:20), 2.1.6 (2022-05-15 22:40), 2.1.7 (2022-06-06 22:10), 2.1.8 (2022-10-02 17:30), 2.1.9 (2023-01-12 14:00), 2.1.10 (2023-01-26 23:00)
Other packages that cited adegenet R package
View adegenet citation profile
Other R packages that adegenet depends, imports, suggests or enhances
Complete documentation for adegenet
Functions, R codes and Examples using the adegenet R package
Some associated functions: AIC.snapclust . AICc . BIC.snapclust . H3N2 . HWE . Hs . Hs.test . KIC . SNPbin . accessors . adegenet.package . as-methods . as.SNPbin . as.genlight . ascore . auxil . chooseCN . colorplot . compoplot . coords.monmonier . dapc . dapcGraphics . dapcIllus . df2genind . dist.genpop . doc_C_routines . eHGDP . export_to_mvmapper . fasta2DNAbin . fasta2genlight . find.clusters . gengraph . genind . genind2df . genind2genpop . genlight . genpop . glAux . glPca . glPlot . glSim . haploGen . hierarchy-methods . hybridize . hybridtoy . import2genind . inbreeding . isPoly . loadingplot . makefreq . microbov . minorAllele . monmonier . mutations . nancycats . new.genind . new.genpop . old2new . pairDist . population-methods . propShared . propTyped . read.PLINK . read.fstat . read.genepop . read.genetix . read.snp . read.structure . repool . rupica . scaleGen . selpopsize . seploc . seppop . seqTrack . sequences . servers . showmekittens . sim2pop . snapclust.choose.k . snapclust . snpposi . spca . spca.rtests . spcaIllus . spca_randtest . strata-methods . swallowtails . tab . truenames . virClasses . web . xvalDapc . 
Some associated R codes: AIC.snapclust.R . AICc.snapclust.R . BIC.snapclust.R . HWE.R . Hs.R . KIC.snapclust.R . PCtest.R . SNPbin.R . accessors.R . adegenet.package.R . auxil.R . basicMethods.R . chooseCN.R . classes.R . colorplot.R . compoplot.R . constructors.R . coords.monmonier.R . dapc.R . datasets.R . dist.genlight.R . dist.genpop.R . doc_C_routines.R . export.R . export_to_mvmapper.R . find.clust.R . fstat.R . gengraph.R . genind2genpop.R . glFunctions.R . glHandle.R . glPlot.R . glSim.R . global_local_tests.R . gstat.randtest.R . handling.R . haploGen.R . haploPop.R . hierarchyMethods.R . hybridize.R . import.R . inbreeding.R . loadingplot.R . makefreq.R . minorAllele.R . monmonier.R . mutations.R . old2new.R . orthobasis.R . pairDist.R . propShared.R . propTyped.R . scale.R . seqTrack.R . sequences.R . servers.R . setAs.R . showmekittens.R . simOutbreak.R . snapclust.R . snapclust.choose.k.R . snpposi.R . snpzip.R . spca.R . spca_randtest.R . strataMethods.R . xvalDapc.R . zzz.R .  Full adegenet package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA