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abdiv
View on CRAN: Click
here
Download and install abdiv package within the R console
Install from CRAN:
install.packages("abdiv")
Install from Github:
library("remotes")
install_github("cran/abdiv")
Install by package version:
library("remotes")
install_version("abdiv", "0.2.0")
Attach the package and use:
library("abdiv")
Maintained by
Kyle Bittinger
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-01-20
Latest Update: 2020-01-20
Description:
A collection of measures for measuring ecological diversity.
Ecological diversity comes in two flavors: alpha diversity measures the
diversity within a single site or sample, and beta diversity measures the
diversity across two sites or samples. This package overlaps considerably
with other R packages such as 'vegan', 'gUniFrac', 'betapart', and 'fossil'.
We also include a wide range of functions that are implemented in software
outside the R ecosystem, such as 'scipy', 'Mothur', and 'scikit-bio'. The
implementations here are designed to be basic and clear to the reader.
How to cite:
Kyle Bittinger (2020). abdiv: Alpha and Beta Diversity Measures. R package version 0.2.0, https://cran.r-project.org/web/packages/abdiv. Accessed 21 Nov. 2024.
Previous versions and publish date:
No previous versions
Other packages that cited abdiv R package
View abdiv citation profile
Other R packages that abdiv depends,
imports, suggests or enhances
Complete documentation for abdiv
Functions, R codes and Examples using
the abdiv R package
Some associated functions: berger_parker_d . binomial_deviance . bray_curtis . bray_curtis_components . canberra . chebyshev . correlation_distance . diversity_measures . euclidean . faith_pd . faith_tree . hamming . jaccard . jaccard_components . kempton_taylor_q . kullback_leibler_divergence . leprieur_tree . lozupone_tree . manhattan . margalef . match_to_tree . mcintosh_d . mcintosh_e . menhinick . minkowski . morisita . richness . ruzicka . shannon . simpson . strong . unifrac . unifrac_components . weighted_kulczynski_second .
Some associated R codes: alpha.R . beta.R . beta_components.R . diversity_measures.R . unifrac.R . Full abdiv package functions and examples
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