Other packages > Find by keyword >

aPCoA  

Covariate Adjusted PCoA Plot
View on CRAN: Click here


Download and install aPCoA package within the R console
Install from CRAN:
install.packages("aPCoA")

Install from Github:
library("remotes")
install_github("cran/aPCoA")

Install by package version:
library("remotes")
install_version("aPCoA", "1.3")



Attach the package and use:
library("aPCoA")
Maintained by
Yushu Shi
[Scholar Profile | Author Map]
First Published: 2020-03-25
Latest Update: 2021-12-13
Description:
In fields such as ecology, microbiology, and genomics, non-Euclidean distances are widely applied to describe pairwise dissimilarity between samples. Given these pairwise distances, principal coordinates analysis (PCoA) is commonly used to construct a visualization of the data. However, confounding covariates can make patterns related to the scientific question of interest difficult to observe. We provide 'aPCoA' as an easy-to-use tool to improve data visualization in this context, enabling enhanced presentation of the effects of interest. Details are described in Yushu Shi, Liangliang Zhang, Kim-Anh Do, Christine Peterson and Robert Jenq (2020) Bioinformatics, Volume 36, Issue 13, 4099-4101.
How to cite:
Yushu Shi (2020). aPCoA: Covariate Adjusted PCoA Plot. R package version 1.3, https://cran.r-project.org/web/packages/aPCoA. Accessed 02 May. 2025.
Previous versions and publish date:
1.0 (2020-03-25 17:50), 1.1 (2020-06-11 06:30), 1.2 (2020-08-12 23:10)
Other packages that cited aPCoA R package
View aPCoA citation profile
Other R packages that aPCoA depends, imports, suggests or enhances
Complete documentation for aPCoA
Functions, R codes and Examples using the aPCoA R package
Some associated functions: Tasmania . aPCoA . 
Some associated R codes: aPCoA.R .  Full aPCoA package functions and examples
Downloads during the last 30 days
04/0204/0304/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/30Downloads for aPCoA05101520253035TrendBars

Today's Hot Picks in Authors and Packages

contFracR  
Continued Fraction Generators and Evaluators
Converts numbers to continued fractions and back again. A solver for Pell's Equation is provided. T ...
Download / Learn more Package Citations See dependency  
disprofas  
Non-Parametric Dissolution Profile Analysis
Similarity of dissolution profiles is assessed using the similarity factor f2 according to the EMA ...
Download / Learn more Package Citations See dependency  
quotedargs  
A Way of Writing Functions that Quote their Arguments
A facility for writing functions that quote their arguments, may sometimes evaluate them in the env ...
Download / Learn more Package Citations See dependency  
frailtypack  
Shared, Joint (Generalized) Frailty Models; Surrogate Endpoints
The following several classes of frailty models using a penalized likelihood estimation on the hazar ...
Download / Learn more Package Citations See dependency  
nlsem  
Fitting Structural Equation Mixture Models
Estimation of structural equation models with nonlinear effects and underlying nonnormal distributi ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

24,142

R Packages

207,311

Dependencies

65,176

Author Associations

24,143

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA