Other packages > Find by keyword >

aPCoA  

Covariate Adjusted PCoA Plot
View on CRAN: Click here


Download and install aPCoA package within the R console
Install from CRAN:
install.packages("aPCoA")

Install from Github:
library("remotes")
install_github("cran/aPCoA")

Install by package version:
library("remotes")
install_version("aPCoA", "1.3")



Attach the package and use:
library("aPCoA")
Maintained by
Yushu Shi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-03-25
Latest Update: 2021-12-13
Description:
In fields such as ecology, microbiology, and genomics, non-Euclidean distances are widely applied to describe pairwise dissimilarity between samples. Given these pairwise distances, principal coordinates analysis (PCoA) is commonly used to construct a visualization of the data. However, confounding covariates can make patterns related to the scientific question of interest difficult to observe. We provide 'aPCoA' as an easy-to-use tool to improve data visualization in this context, enabling enhanced presentation of the effects of interest. Details are described in Yushu Shi, Liangliang Zhang, Kim-Anh Do, Christine Peterson and Robert Jenq (2020) Bioinformatics, Volume 36, Issue 13, 4099-4101.
How to cite:
Yushu Shi (2020). aPCoA: Covariate Adjusted PCoA Plot. R package version 1.3, https://cran.r-project.org/web/packages/aPCoA. Accessed 25 Jun. 2026.
Previous versions and publish date:
1.0 (2020-03-25 17:50), 1.1 (2020-06-11 06:30), 1.2 (2020-08-12 23:10)
Other packages that cited aPCoA R package
View aPCoA citation profile
Other R packages that aPCoA depends, imports, suggests or enhances
Complete documentation for aPCoA
Functions, R codes and Examples using the aPCoA R package
Some associated functions: Tasmania . aPCoA . 
Some associated R codes: aPCoA.R .  Full aPCoA package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

edeaR  
Exploratory and Descriptive Event-Based Data Analysis
Exploratory and descriptive analysis of event based data. Provides methods for describing and select ...
Download / Learn more Package Citations See dependency  
airGRiwrm  
'airGR' Integrated Water Resource Management
Semi-distributed Precipitation-Runoff Modelling based on 'airGR' package models integrating human i ...
Download / Learn more Package Citations See dependency  
sitmo  
Parallel Pseudo Random Number Generator (PPRNG) 'sitmo' Header Files
Provided within are two high quality and fast PPRNGs that may be used in an 'OpenMP' parallel enviro ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
foster  
Forest Structure Extrapolation with R
Set of tools to streamline the modeling of the relationship betweensatellite imagery time series or ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA