Other packages > Find by keyword >

WayFindR  

Computing Graph Structures on WikiPathways
View on CRAN: Click here


Download and install WayFindR package within the R console
Install from CRAN:
install.packages("WayFindR")

Install from Github:
library("remotes")
install_github("cran/WayFindR")

Install by package version:
library("remotes")
install_version("WayFindR", "0.7.0")



Attach the package and use:
library("WayFindR")
Maintained by
Kevin R. Coombes
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-04-10
Latest Update: 2025-04-09
Description:
Converts pathways from 'WikiPathways' GPML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).
How to cite:
Kevin R. Coombes (2024). WayFindR: Computing Graph Structures on WikiPathways. R package version 0.7.0, https://cran.r-project.org/web/packages/WayFindR. Accessed 06 Mar. 2026.
Previous versions and publish date:
0.1.2 (2024-04-10 21:50), 0.3.1 (2025-04-09 09:40), 0.4.1 (2025-09-20 22:10), 0.5.0 (2025-11-05 23:20)
Other packages that cited WayFindR R package
View WayFindR citation profile
Other R packages that WayFindR depends, imports, suggests or enhances
Complete documentation for WayFindR
Functions, R codes and Examples using the WayFindR R package
Full WayFindR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
mlr3viz  
Visualizations for 'mlr3'
Visualization package of the 'mlr3' ecosystem. It features plots for mlr3 objects such as tasks, le ...
Download / Learn more Package Citations See dependency  
solitude  
An Implementation of Isolation Forest
Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detecti ...
Download / Learn more Package Citations See dependency  
openxlsx  
Read, Write and Edit xlsx Files
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, stylin ...
Download / Learn more Package Citations See dependency  
lbfgs  
Limited-memory BFGS Optimization
A wrapper built around the libLBFGS optimization library by Naoaki Okazaki. The lbfgs package implem ...
Download / Learn more Package Citations See dependency  
EMVS  
The Expectation-Maximization Approach to Bayesian Variable Selection
An efficient expectation-maximization algorithm for fitting Bayesian spike-and-slab regularization p ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA