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VertexSort
View on CRAN: Click
here
Download and install VertexSort package within the R console
Install from CRAN:
install.packages("VertexSort")
Install from Github:
library("remotes")
install_github("cran/VertexSort")
Install by package version:
library("remotes")
install_version("VertexSort", "0.1-1")
Attach the package and use:
library("VertexSort")
Maintained by
Diala Abd-Rabbo
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-03-04
Latest Update: 2017-03-09
Description:
Permits to apply the 'Vertex Sort' algorithm (Jothi et al. (2009) <10.1038/msb.2009.52>) to a graph in order to elucidate its hierarchical structure. It also allows graphic visualization of the sorted graph by exporting the results to a cytoscape friendly format. Moreover, it offers five different algorithms of graph randomization: 1) Randomize a graph with preserving node degrees, 2) with preserving similar node degrees, 3) without preserving node degrees, 4) with preserving node in-degrees and 5) with preserving node out-degrees.
How to cite:
Diala Abd-Rabbo (2017). VertexSort: Network Hierarchical Structure and Randomization. R package version 0.1-1, https://cran.r-project.org/web/packages/VertexSort. Accessed 06 Jan. 2025.
Other packages that cited VertexSort R package
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Other R packages that VertexSort depends,
imports, suggests or enhances
Functions, R codes and Examples using
the VertexSort R package
Some associated functions: VertexSort-package . dpr . export.to.cytoscape . interactions . vertex.sort .
Some associated R codes: Collapse_subgraph.R . Create_rand_g_with_preserving_in_degrees.R . Create_rand_g_with_preserving_out_degrees.R . Create_rand_g_without_preserving_degrees.R . Create_similar_graph.R . Leaf_removal_algorithm.R . Sub_switch_edges.R . Switch_edges.R . Transpose_graph.R . apply.vertex.sort.R . dnpr.R . dpr.R . export.to.cytoscape.R . idpr.R . odpr.R . print.summary.vertex.sort.R . print.vertex.sort.R . sdpr.R . summary.vertex.sort.R . vertex.sort.R . Full VertexSort package functions and examples
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