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UniprotR  

Retrieving Information of Proteins from Uniprot
View on CRAN: Click here


Download and install UniprotR package within the R console
Install from CRAN:
install.packages("UniprotR")

Install from Github:
library("remotes")
install_github("cran/UniprotR")

Install by package version:
library("remotes")
install_version("UniprotR", "2.4.0")



Attach the package and use:
library("UniprotR")
Maintained by
Mohamed Soudy
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-07-23
Latest Update: 2023-08-27
Description:
Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.
How to cite:
Mohamed Soudy (2019). UniprotR: Retrieving Information of Proteins from Uniprot. R package version 2.4.0, https://cran.r-project.org/web/packages/UniprotR
Previous versions and publish date:
1.0.0 (2019-07-23 10:20), 1.0.1 (2019-07-25 17:20), 1.0.2 (2019-08-06 09:30), 1.0.3 (2019-08-19 11:00), 1.1.0 (2019-11-05 10:10), 1.1.1 (2019-11-07 12:10), 1.1.2 (2019-11-17 13:20), 1.2.2 (2019-11-29 12:20), 1.2.3 (2020-01-21 15:30), 1.2.4 (2020-03-19 10:20), 1.2.5 (2020-05-13 18:20), 1.3.0 (2020-05-27 00:40), 1.3.1 (2020-06-13 17:40), 1.4.0 (2020-07-26 15:20), 2.0.0 (2020-12-13 14:10), 2.0.1 (2020-12-15 17:40), 2.0.2 (2021-01-12 14:40), 2.0.3 (2021-01-23 12:40), 2.0.4 (2021-02-26 17:40), 2.0.5 (2021-03-09 19:50), 2.0.6 (2021-04-06 13:20), 2.0.7 (2021-06-06 08:50), 2.0.8 (2021-07-10 11:00), 2.1.0 (2021-09-23 09:10), 2.1.1 (2022-06-28 15:00), 2.2.0 (2022-07-03 14:30), 2.2.1 (2022-08-15 16:30), 2.2.2 (2022-10-04 16:00), 2.3.0 (2023-08-27 16:10)
Other packages that cited UniprotR R package
View UniprotR citation profile
Other R packages that UniprotR depends, imports, suggests or enhances
Functions, R codes and Examples using the UniprotR R package
Some associated functions: ConstructGenesTree . ConstructLocTree . ConvertID . Enrichment.BP . Enrichment.CC . Enrichment.KEGG . Enrichment.MF . Enrichment.REAC . GETSeqFastaUniprot . Get.diseases . GetAccessionList . GetExpression . GetFamily_Domains . GetGeneral_Information . GetMiscellaneous . GetNamesTaxa . GetPTM_Processing . GetPathology_Biotech . GetProteinAnnontate . GetProteinFunction . GetProteinGOInfo . GetProteinInteractions . GetProteomeFasta . GetProteomeInfo . GetPublication . GetSeqLength . GetSequenceIso . GetSequences . GetStructureInfo . GetSubcellular_location . GetpdbStructure . GetproteinNetwork . GetproteinNetwork_all . Goparse . HandleBadRequests . Pathway.Enr . Plot.GOMolecular . Plot.GOSubCellular . PlotAcidity . PlotCharge . PlotChromosomeInfo . PlotEnrichedGO . PlotEnrichedPathways . PlotGOAll . PlotGOBiological . PlotGenesNetwork . PlotGoInfo . PlotGoterms . PlotGravy . PlotPhysicochemical . PlotProteinGO_bio . PlotProteinGO_cel . PlotProteinGO_molc . PlotProteinTaxa . PlotproteinExist . PlotproteinStatus . ProcessAcc . 
Some associated R codes: ConstructGenesTree.R . ConstructLocTree.R . ConvertID.R . GETSeqFastaUniprot.R . GetAccessionList.R . GetExpression.R . GetFamily_Domains.R . GetGeneral_Information.R . GetMiscellaneous.R . GetNamesTaxa.R . GetPTM_Processing.R . GetPathology_Biotech.R . GetProteinFunction.R . GetProteinGOInfo.R . GetProteinInteractions.R . GetProteoAnnotator.R . GetProteomeFasta.R . GetProteomeInfo.R . GetPublication.R . GetSeqLength.R . GetSequenceIso.R . GetSequences.R . GetStructureInfo.R . GetSubcellular_location.R . Getdiseases.R . GetpdbStructure.R . GetproteinNetwork.R . GetproteinNetwork_all.R . HandleBadRequests.R . PathwayAnalysis.R . PlotAcidity.R . PlotCharge.R . PlotChromosomeInfo.R . PlotEnrichedGO.R . PlotEnrichedPathways.R . PlotGOAll.R . PlotGenesNetwork.R . PlotGoInfo.R . PlotGoterms.R . PlotGravy.R . PlotPhyscochemical.R . PlotProteinTaxa.R . PlotproteinExist.R . PlotproteinStatus.R . ProcessAcc.R . plot_GO.R .  Full UniprotR package functions and examples
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