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UnifiedDoseFinding
View on CRAN: Click
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Download and install UnifiedDoseFinding package within the R console
Install from CRAN:
install.packages("UnifiedDoseFinding")
Install from Github:
library("remotes")
install_github("cran/UnifiedDoseFinding")
Install by package version:
library("remotes")
install_version("UnifiedDoseFinding", "0.1.10")
Attach the package and use:
library("UnifiedDoseFinding")
Maintained by
Chia-Wei Hsu
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-08
Latest Update: 2022-10-15
Description:
In many phase I trials, the design goal is to find the dose associated with a certain target toxicity rate. In some trials, the goal can be to find the dose with a certain weighted sum of rates of various toxicity grades. For others, the goal is to find the dose with a certain mean value of a continuous response. This package provides the setup and calculations needed to run a dose-finding trial with non-binary endpoints and performs simulations to assess design’s operating characteristics under various scenarios. Three dose finding designs are included in this package: unified phase I design (Ivanova et al. (2009) <doi:10.1111/j.1541-0420.2008.01045.x>), Quasi-CRM/Robust-Quasi-CRM (Yuan et al. (2007) <doi:10.1111/j.1541-0420.2006.00666.x>, Pan et al. (2014) <doi:10.1371/journal.pone.0098147>) and generalized BOIN design (Mu et al. (2018) <doi:10.1111/rssc.12263>). The toxicity endpoints can be handled with these functions including equivalent toxicity score (ETS), total toxicity burden (TTB), general continuous toxicity endpoints, with incorporating ordinal grade toxicity information into dose-finding procedure. These functions allow customization of design characteristics to vary sample size, cohort sizes, target dose-limiting toxicity (DLT) rates, discrete or continuous toxicity score, and incorporate safety and/or stopping rules.
How to cite:
Chia-Wei Hsu (2020). UnifiedDoseFinding: Dose-Finding Methods for Non-Binary Outcomes. R package version 0.1.10, https://cran.r-project.org/web/packages/UnifiedDoseFinding. Accessed 21 Nov. 2024.
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Complete documentation for UnifiedDoseFinding
Functions, R codes and Examples using
the UnifiedDoseFinding R package
Some associated functions: get_oc_Ivanova_binary . get_oc_Ivanova_continuous . get_oc_QuasiBOIN . get_oc_RQ_CRM . get_oc_gBOIN_TB . get_oc_gBOIN_continuous . next_Ivanova_binary . next_Ivanova_continuous . next_QuasiBOIN . next_RQ_CRM . next_gBOIN_TB . next_gBOIN_continuous . select_mtd_Ivanova_binary . select_mtd_Ivanova_continuous . select_mtd_QuasiBOIN . select_mtd_RQ_CRM . select_mtd_gBOIN_TB . select_mtd_gBOIN_continuous .
Some associated R codes: get_boundary_BOIN.R . get_boundary_QuasiBOIN.R . get_oc_BOIN.R . get_oc_Ivanova_binary.R . get_oc_Ivanova_continuous.R . get_oc_RQ_CRM.R . get_oc_gBOIN_TB.R . get_oc_gBOIN_continuous.R . get_oc_n_QuasiBOIN.R . next_BOIN.R . next_Ivanova_binary.R . next_Ivanova_continuous.R . next_QuasiBOIN.R . next_RQ_CRM.R . next_gBOIN_TB.R . next_gBOIN_continuous.R . nonpart_binary.R . nonpart_continuous.R . pava_binary.R . pava_continuous.R . rmultinom1.R . select_mtd_BOIN.R . select_mtd_Ivanova_binary.R . select_mtd_Ivanova_continuous.R . select_mtd_QuasiBOIN.R . select_mtd_RQ_CRM.R . select_mtd_gBOIN_TB.R . select_mtd_gBOIN_continuous.R . Full UnifiedDoseFinding package functions and examples
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