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UCSCXenaShiny  

Interactive Analysis of UCSC Xena Data
View on CRAN: Click here


Download and install UCSCXenaShiny package within the R console
Install from CRAN:
install.packages("UCSCXenaShiny")

Install from Github:
library("remotes")
install_github("cran/UCSCXenaShiny")

Install by package version:
library("remotes")
install_version("UCSCXenaShiny", "2.1.0")



Attach the package and use:
library("UCSCXenaShiny")
Maintained by
Shixiang Wang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-05-09
Latest Update: 2023-02-28
Description:
Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
How to cite:
Shixiang Wang (2019). UCSCXenaShiny: Interactive Analysis of UCSC Xena Data. R package version 2.1.0, https://cran.r-project.org/web/packages/UCSCXenaShiny. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.0 (2019-05-09 10:30), 0.1.1 (2019-05-19 16:10), 0.2.0 (2019-07-10 08:41), 0.3.0 (2019-08-23 17:30), 0.4.0 (2019-11-02 22:50), 0.5.0 (2020-06-03 15:40), 1.0.0 (2021-05-16 07:00), 1.0.1 (2021-06-23 12:10), 1.1.0 (2021-07-16 13:20), 1.1.1 (2021-07-30 06:50), 1.1.2 (2021-11-17 06:30), 1.1.3 (2021-11-29 06:40), 1.1.4 (2021-12-13 09:00), 1.1.5 (2022-01-15 12:32), 1.1.7 (2022-04-13 09:52), 1.1.8 (2022-06-07 10:10), 1.1.9 (2022-12-12 10:00), 1.1.10 (2023-02-28 16:32), 2.0.0 (2024-03-14 04:20)
Other packages that cited UCSCXenaShiny R package
View UCSCXenaShiny citation profile
Other R packages that UCSCXenaShiny depends, imports, suggests or enhances
Complete documentation for UCSCXenaShiny
Functions, R codes and Examples using the UCSCXenaShiny R package
Some associated functions: TCGA.organ . UCSCXenaShiny . analyze_gene_drug_response_asso . analyze_gene_drug_response_diff . app_run . available_hosts . ccle_absolute . ccle_info . ezcor . ezcor_batch . ezcor_partial_cor . get_pancan_value . keep_cat_cols . load_data . pcawg_info . pcawg_purity . pipe . query_molecule_value . query_pancan_value . query_toil_value_df . tcga_clinical . tcga_genome_instability . tcga_gtex . tcga_purity . tcga_subtypes . tcga_surv . tcga_surv_analysis . tcga_tmb . toil_info . vis_ccle_gene_cor . vis_ccle_tpm . vis_gene_TIL_cor . vis_gene_cor . vis_gene_cor_cancer . vis_gene_drug_response_asso . vis_gene_drug_response_diff . vis_gene_immune_cor . vis_gene_msi_cor . vis_gene_stemness_cor . vis_gene_tmb_cor . vis_identifier_cor . vis_identifier_grp_comparison . vis_identifier_grp_surv . vis_identifier_multi_cor . vis_pancan_anatomy . vis_pcawg_dist . vis_pcawg_gene_cor . vis_pcawg_unicox_tree . vis_toil_TvsN . vis_toil_TvsN_cancer . vis_unicox_tree . 
Some associated R codes: GeomSplitViolin.R . analyze_gene_drug_response.R . ccle.R . data.R . ezcor.R . get_pancan_value.R . get_pcawg_value.R . globalVariables.R . load_data.R . ope_pancan_value.R . query_custom_value.R . query_toil_value_df.R . query_value.R . run.R . tcga_surv.R . utils-pipe.R . utils.R . vis_analyze_gene_drug_response.R . vis_ccle_value.R . vis_identifier.R . vis_pancan_value.R . vis_pcawg_value.R . xenashiny.R . zzz.R .  Full UCSCXenaShiny package functions and examples
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