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TrenchR  

Tools for Microclimate and Biophysical Ecology
View on CRAN: Click here


Download and install TrenchR package within the R console
Install from CRAN:
install.packages("TrenchR")

Install from Github:
library("remotes")
install_github("cran/TrenchR")

Install by package version:
library("remotes")
install_version("TrenchR", "1.1.1")



Attach the package and use:
library("TrenchR")
Maintained by
Lauren Buckley
[Scholar Profile | Author Map]
First Published: 2022-07-13
Latest Update: 2023-09-13
Description:
Tools for translating environmental change into organismal response. Microclimate models to vertically scale weather station data to organismal heights. The biophysical modeling tools include both general models for heat flows and specific models to predict body temperatures for a variety of ectothermic taxa. Additional functions model and temporally partition air and soil temperatures and solar radiation. Utility functions estimate the organismal and environmental parameters needed for biophysical ecology. 'TrenchR' focuses on relatively simple and modular functions so users can create transparent and flexible biophysical models. Many functions are derived from Gates (1980) <doi:10.1007/978-1-4612-6024-0> and Campbell and Norman (1988) <isbn:9780387949376>.
How to cite:
Lauren Buckley (2022). TrenchR: Tools for Microclimate and Biophysical Ecology. R package version 1.1.1, https://cran.r-project.org/web/packages/TrenchR. Accessed 07 Apr. 2025.
Previous versions and publish date:
0.1.0 (2022-07-13 09:30), 0.1.1 (2022-09-21 00:10)
Other packages that cited TrenchR R package
View TrenchR citation profile
Other R packages that TrenchR depends, imports, suggests or enhances
Complete documentation for TrenchR
Functions, R codes and Examples using the TrenchR R package
Some associated functions: DRYAIR . Grashof_number . Grashof_number_Gates . Nusselt_from_Grashof . Nusselt_from_Reynolds . Nusselt_number . Prandtl_number . Qconduction_animal . Qconduction_substrate . Qconvection . Qemitted_thermal_radiation . Qevaporation . Qmetabolism_from_mass . Qmetabolism_from_mass_temp . Qnet_Gates . Qradiation_absorbed . Qthermal_radiation_absorbed . Reynolds_number . TPC . TPC_beta . Tb_CampbellNorman . Tb_Gates . Tb_Gates2 . Tb_butterfly . Tb_grasshopper . Tb_limpet . Tb_limpetBH . Tb_lizard . Tb_lizard_Fei . Tb_mussel . Tb_salamander_humid . Tb_snail . Tbed_mussel . TrenchR . Tsoil . VAPPRS . WETAIR . actual_vapor_pressure . air_temp_profile . air_temp_profile_neutral . air_temp_profile_segment . airpressure_from_elev . angle-conversions . azimuth_angle . boundary_layer_resistance . constants . day_of_year . daylength . dec_angle . degree_days . direct_solar_radiation . diurnal_radiation_variation . diurnal_temp_variation_sine . diurnal_temp_variation_sineexp . diurnal_temp_variation_sinesqrt . external_resistance_to_water_vapor_transfer . free_or_forced_convection . heat_transfer_coefficient . heat_transfer_coefficient_approximation . heat_transfer_coefficient_simple . mass_from_length . monthly_solar_radiation . partition_solar_radiation . proportion_diffuse_solar_radiation . proportion_silhouette_area . proportion_silhouette_area_shapes . saturation_vapor_pressure . saturation_water_vapor_pressure . soil_conductivity . soil_specific_heat . soil_temperature . soil_temperature_equation . soil_temperature_function . soil_temperature_integrand . solar_noon . solar_radiation . surface_area_from_length . surface_area_from_mass . surface_area_from_volume . surface_roughness . temperature-conversions . volume_from_length . wind_speed_profile_neutral . wind_speed_profile_segment . zenith_angle . 
Some associated R codes: AllometricFunctions.R . DDFunctions.R . DRYWETAIR.R . DTRFunctions.R . Notes.R . OperativeTemperatureFunctions.R . RadiationFunctions.R . RadiationPartitioningFunctions.R . TPCfunctions.R . TempWindProfileFunctions.R . TrenchR.R . TsoilFunctions.R . UtilityFunctions.R . biophysmodel_Colias.R . biophysmodel_Grasshopper.R . biophysmodel_Limpet.R . biophysmodel_LizardFei.R . biophysmodel_Mussel.R . biophysmodel_MusselBed.R . biophysmodel_Sceloporus.R . biophysmodel_Snail.R . biophysmodel_limpetBH.R . constants.R . energybalance_functions.R .  Full TrenchR package functions and examples
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