R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
TreeSimGM
View on CRAN: Click
here
Download and install TreeSimGM package within the R console
Install from CRAN:
install.packages("TreeSimGM")
Install from Github:
library("remotes")
install_github("cran/TreeSimGM") Install by package version:
library("remotes")
install_version("TreeSimGM", "2.5") Attach the package and use:
library("TreeSimGM")
Maintained by
Oskar Hagen
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-02-14
Latest Update: 2020-03-05
Description:
Provides a flexible simulation tool for phylogenetic trees under a general model for speciation and extinction. Trees with a user-specified number of extant tips, or a user-specified stem age are simulated. It is possible to assume any probability distribution for the waiting time until speciation and extinction. Furthermore, the waiting times to speciation / extinction may be scaled in different parts of the tree, meaning we can simulate trees with clade-dependent diversification processes. At a speciation event, one species splits into two. We allow for two different modes at these splits: (i) symmetric, where for every speciation event new waiting times until speciation and extinction are drawn for both daughter lineages; and (ii) asymmetric, where a speciation event results in one species with new waiting times, and another that carries the extinction time and age of its ancestor. The symmetric mode can be seen as an vicariant or allopatric process where divided populations suffer equal evolutionary forces while the asymmetric mode could be seen as a peripatric speciation where a mother lineage continues to exist.Reference: O. Hagen and T. Stadler (2017). TreeSimGM: Simulating phylogenetic trees under general Bellman Harris models with lineage-specific shifts of speciation and extinction in R. Methods in Ecology and Evolution. <doi:10.1111/2041-210X.12917>.
How to cite:
Oskar Hagen (2013). TreeSimGM: Simulating Phylogenetic Trees under General Bellman Harris and Lineage Shift Model. R package version 2.5, https://cran.r-project.org/web/packages/TreeSimGM. Accessed 07 Mar. 2026.
Previous versions and publish date:
Other packages that cited TreeSimGM R package
View TreeSimGM citation profile
Other R packages that TreeSimGM depends,
imports, suggests or enhances
Complete documentation for TreeSimGM
Functions, R codes and Examples using
the TreeSimGM R package
Some associated functions: TreeSimGM-package . sim.age . sim.taxa . track.shift .
Some associated R codes: mytree.asymmetric.age.R . mytree.asymmetric.taxa.R . mytree.symmetric.age.R . mytree.symmetric.taxa.R . sim.age.R . sim.taxa.R . track.shift.R . Full TreeSimGM package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
lmSubsets
Exact and approximation algorithms for variable-subset
selection in ordinary linear regression mode ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Marc Hofmann (view profile)
ReviewR
A portable Shiny tool to explore patient-level electronic health record data
and perform chart revi ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: David Mayer (view profile)
portalr
Download and generate summaries for the rodent,
plant, ant, and weather data from the Portal Projec ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Glenda M. Yenni (view profile)
SAMtool
Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Quang Huynh (view profile)
testDriveR
Provides data sets for teaching statistics and data science courses. It includes a sample of data f ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Christopher Prener (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
26,264
R Packages
223,360
Dependencies
70,376
Author Associations
26,265
Publication Badges
