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TransPhylo  

Inference of Transmission Tree from a Dated Phylogeny
View on CRAN: Click here


Download and install TransPhylo package within the R console
Install from CRAN:
install.packages("TransPhylo")

Install from Github:
library("remotes")
install_github("cran/TransPhylo")

Install by package version:
library("remotes")
install_version("TransPhylo", "1.4.5")



Attach the package and use:
library("TransPhylo")
Maintained by
Xavier Didelot
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-13
Latest Update: 2021-04-20
Description:
Inference of transmission tree from a dated phylogeny. Includes methods to simulate and analyse outbreaks. The methodology is described in Didelot et al. (2014) <doi:10.1093/molbev/msu121>, Didelot et al. (2017) <doi:10.1093/molbev/msw275>.
How to cite:
Xavier Didelot (2020). TransPhylo: Inference of Transmission Tree from a Dated Phylogeny. R package version 1.4.5, https://cran.r-project.org/web/packages/TransPhylo. Accessed 06 Mar. 2026.
Previous versions and publish date:
1.4.2 (2020-05-13 18:00), 1.4.4 (2020-06-08 23:40), 1.4.5 (2021-04-20 15:30)
Other packages that cited TransPhylo R package
View TransPhylo citation profile
Other R packages that TransPhylo depends, imports, suggests or enhances
Complete documentation for TransPhylo
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