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TotalCopheneticIndex  

Quantify the Balance of Phylogenetic Trees
View on CRAN: Click here


Download and install TotalCopheneticIndex package within the R console
Install from CRAN:
install.packages("TotalCopheneticIndex")

Install from Github:
library("remotes")
install_github("cran/TotalCopheneticIndex")

Install by package version:
library("remotes")
install_version("TotalCopheneticIndex", "2.0.1")



Attach the package and use:
library("TotalCopheneticIndex")
Maintained by
Martin R. Smith
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-03-26
Latest Update: 2021-06-23
Description:
Measures the degree of balance for a given phylogenetic tree by calculating the Total Cophenetic Index. Reference: A. Mir, F. Rossello, L. A. Rotger (2013). A new balance index for phylogenetic trees. Math. Biosci. 241, 125-136 <doi:10.1016/j.mbs.2012.10.005>.
How to cite:
Martin R. Smith (2016). TotalCopheneticIndex: Quantify the Balance of Phylogenetic Trees. R package version 2.0.1, https://cran.r-project.org/web/packages/TotalCopheneticIndex. Accessed 28 Oct. 2026.
Previous versions and publish date:
(2026-07-09 08:28), 0.1 (2016-03-26 17:08), 1.0.0 (2017-11-30 14:34), 1.0.1 (2019-01-29 10:10), 2.0.0 (2021-01-28 15:40)
Other packages that cited TotalCopheneticIndex R package
View TotalCopheneticIndex citation profile
Other R packages that TotalCopheneticIndex depends, imports, suggests or enhances
Complete documentation for TotalCopheneticIndex
Functions, R codes and Examples using the TotalCopheneticIndex R package
Some associated functions: list.ancestors . tci.context . tci . 
Some associated R codes: total.cophenetic.index.R .  Full TotalCopheneticIndex package functions and examples
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