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TaxaNorm  

Feature-Wise Normalization for Microbiome Sequencing Data
View on CRAN: Click here


Download and install TaxaNorm package within the R console
Install from CRAN:
install.packages("TaxaNorm")

Install from Github:
library("remotes")
install_github("cran/TaxaNorm")

Install by package version:
library("remotes")
install_version("TaxaNorm", "2.4")



Attach the package and use:
library("TaxaNorm")
Maintained by
Dillon Lloyd
[Scholar Profile | Author Map]
First Published: 2023-12-12
Latest Update: 2023-12-12
Description:
A novel feature-wise normalization method based on a zero-inflated negative binomial model. This method assumes that the effects of sequencing depth vary for each taxon on their mean and also incorporates a rational link of zero probability and taxon dispersion as a function of sequencing depth. Ziyue Wang, Dillon Lloyd, Shanshan Zhao, Alison Motsinger-Reif (2023) <doi:10.1101/2023.10.31.563648>.
How to cite:
Dillon Lloyd (2023). TaxaNorm: Feature-Wise Normalization for Microbiome Sequencing Data. R package version 2.4, https://cran.r-project.org/web/packages/TaxaNorm. Accessed 17 Feb. 2025.
Previous versions and publish date:
No previous versions
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Complete documentation for TaxaNorm
Functions, R codes and Examples using the TaxaNorm R package
Full TaxaNorm package functions and examples
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