Other packages > Find by keyword >

TaxaNorm  

Feature-Wise Normalization for Microbiome Sequencing Data
View on CRAN: Click here


Download and install TaxaNorm package within the R console
Install from CRAN:
install.packages("TaxaNorm")

Install from Github:
library("remotes")
install_github("cran/TaxaNorm")

Install by package version:
library("remotes")
install_version("TaxaNorm", "2.4")



Attach the package and use:
library("TaxaNorm")
Maintained by
Dillon Lloyd
[Scholar Profile | Author Map]
First Published: 2023-12-12
Latest Update: 2023-12-12
Description:
A novel feature-wise normalization method based on a zero-inflated negative binomial model. This method assumes that the effects of sequencing depth vary for each taxon on their mean and also incorporates a rational link of zero probability and taxon dispersion as a function of sequencing depth. Ziyue Wang, Dillon Lloyd, Shanshan Zhao, Alison Motsinger-Reif (2023) <doi:10.1101/2023.10.31.563648>.
How to cite:
Dillon Lloyd (2023). TaxaNorm: Feature-Wise Normalization for Microbiome Sequencing Data. R package version 2.4, https://cran.r-project.org/web/packages/TaxaNorm. Accessed 09 May. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited TaxaNorm R package
View TaxaNorm citation profile
Other R packages that TaxaNorm depends, imports, suggests or enhances
Complete documentation for TaxaNorm
Functions, R codes and Examples using the TaxaNorm R package
Full TaxaNorm package functions and examples
Downloads during the last 30 days
04/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/0105/0205/0305/0405/0505/0605/07Downloads for TaxaNorm0246810121416TrendBars

Today's Hot Picks in Authors and Packages

assertive.numbers  
Assertions to Check Properties of Numbers
A set of predicates and assertions for checking the properties of numbers. This is mainly for use ...
Download / Learn more Package Citations See dependency  
disparityfilter  
Disparity Filter Algorithm for Weighted Networks
The disparity filter algorithm is a network reduction technique to identify the 'backbone' structur ...
Download / Learn more Package Citations See dependency  
SACOBRA  
Self-Adjusting COBRA
Performs surrogate-assisted optimization for expensive black-box constrained problems. ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

24,205

R Packages

207,311

Dependencies

65,312

Author Associations

24,206

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA