Other packages > Find by keyword >

TTCA  

Transcript Time Course Analysis
View on CRAN: Click here


Download and install TTCA package within the R console
Install from CRAN:
install.packages("TTCA")

Install from Github:
library("remotes")
install_github("cran/TTCA")

Install by package version:
library("remotes")
install_version("TTCA", "0.1.1")



Attach the package and use:
library("TTCA")
Maintained by
Marco Albrecht
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-06-20
Latest Update: 2017-01-29
Description:
The analysis of microarray time series promises a deeper insight into the dynamics of the cellular response following stimulation. A common observation in this type of data is that some genes respond with quick, transient dynamics, while other genes change their expression slowly over time. The existing methods for detecting significant expression dynamics often fail when the expression dynamics show a large heterogeneity. Moreover, these methods often cannot cope with irregular and sparse measurements. The method proposed here is specifically designed for the analysis of perturbation responses. It combines different scores to capture fast and transient dynamics as well as slow expression changes, and performs well in the presence of low replicate numbers and irregular sampling times. The results are given in the form of tables including links to figures showing the expression dynamics of the respective transcript. These allow to quickly recognise the relevance of detection, to identify possible false positives and to discriminate early and late changes in gene expression. An extension of the method allows the analysis of the expression dynamics of functional groups of genes, providing a quick overview of the cellular response. The performance of this package was tested on microarray data derived from lung cancer cells stimulated with epidermal growth factor (EGF). Paper: Albrecht, Marco, et al. (2017)<doi:10.1186/s12859-016-1440-8>.
How to cite:
Marco Albrecht (2016). TTCA: Transcript Time Course Analysis. R package version 0.1.1, https://cran.r-project.org/web/packages/TTCA. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1.0 (2016-06-20 08:19)
Other packages that cited TTCA R package
View TTCA citation profile
Other R packages that TTCA depends, imports, suggests or enhances
Complete documentation for TTCA
Functions, R codes and Examples using the TTCA R package
Some associated functions: Control . EGF . TTCA . annot . annotation . 
Some associated R codes: TTCA.R .  Full TTCA package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  
RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  
SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
pkgdepends  
Package Dependency Resolution and Downloads
Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency  
deductive  
Data Correction and Imputation Using Deductive Methods
Attempt to repair inconsistencies and missing values in data records by using information from vali ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA