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TFMPvalue  

Efficient and Accurate P-Value Computation for Position Weight Matrices
View on CRAN: Click here


Download and install TFMPvalue package within the R console
Install from CRAN:
install.packages("TFMPvalue")

Install from Github:
library("remotes")
install_github("cran/TFMPvalue")

Install by package version:
library("remotes")
install_version("TFMPvalue", "1.0.0")



Attach the package and use:
library("TFMPvalue")
Maintained by
Ge Tan
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-03-31
Latest Update: 2022-10-21
Description:
In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. It is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.
How to cite:
Ge Tan (2014). TFMPvalue: Efficient and Accurate P-Value Computation for Position Weight Matrices. R package version 1.0.0, https://cran.r-project.org/web/packages/TFMPvalue. Accessed 07 Jun. 2026.
Previous versions and publish date:
0.0.2 (2014-03-31 14:47), 0.0.3 (2014-04-24 07:43), 0.0.4 (2014-04-26 00:29), 0.0.5 (2014-05-11 01:32), 0.0.6 (2015-11-29 19:19), 0.0.8 (2018-05-16 10:03), 0.0.9 (2022-10-21 13:55)
Other packages that cited TFMPvalue R package
View TFMPvalue citation profile
Other R packages that TFMPvalue depends, imports, suggests or enhances
Complete documentation for TFMPvalue
Functions, R codes and Examples using the TFMPvalue R package
Some associated functions: TFMPvalue-lazyScore . TFMPvalue-package . TFMPvalue-pv2sc . TFMPvalue-sc2pv . 
Some associated R codes: TFMPvalue-lazyScore.R . TFMPvalue-pv2sc.R . TFMPvalue-sc2pv.R . util.R .  Full TFMPvalue package functions and examples
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