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TE  

Insertion/Deletion Dynamics for Transposable Elements
View on CRAN: Click here


Download and install TE package within the R console
Install from CRAN:
install.packages("TE")

Install from Github:
library("remotes")
install_github("cran/TE")

Install by package version:
library("remotes")
install_version("TE", "0.3-0")



Attach the package and use:
library("TE")
Maintained by
Xiongtao Dai
[Scholar Profile | Author Map]
First Published: 2018-01-16
Latest Update: 2018-08-22
Description:
Provides functions to estimate the insertion and deletion rates of transposable element (TE) families. The estimation of insertion rate consists of an improved estimate of the age distribution that takes into account random mutations, and an adjustment by the deletion rate. A hypothesis test for a uniform insertion rate is also implemented. This package implements the methods proposed in Dai et al (2018).
How to cite:
Xiongtao Dai (2018). TE: Insertion/Deletion Dynamics for Transposable Elements. R package version 0.3-0, https://cran.r-project.org/web/packages/TE. Accessed 01 May. 2025.
Previous versions and publish date:
0.1-1 (2018-01-16 11:44), 0.2-2 (2018-06-01 20:49)
Other packages that cited TE R package
View TE citation profile
Other R packages that TE depends, imports, suggests or enhances
Complete documentation for TE
Functions, R codes and Examples using the TE R package
Some associated functions: AetLTR . AlyLTR . EstDynamics . MasterGene . MatrixModel . PlotFamilies . SensitivityPlot . TE . nbLackOfFitKL . print.TEfit . 
Some associated R codes: AetLTR.R . AlyLTR.R . func.R . pkgname.R .  Full TE package functions and examples
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