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TDCor
View on CRAN: Click
here
Download and install TDCor package within the R console
Install from CRAN:
install.packages("TDCor")
Install from Github:
library("remotes")
install_github("cran/TDCor")
Install by package version:
library("remotes")
install_version("TDCor", "0.1-2")
Attach the package and use:
library("TDCor")
Maintained by
Mikael Lucas
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-04-18
Latest Update: 2015-10-26
Description:
The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data.The algorithm is described in details in Lavenus et al., Plant Cell, 2015.It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana.The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.
How to cite:
Mikael Lucas (2015). TDCor: Gene Network Inference from Time-Series Transcriptomic Data. R package version 0.1-2, https://cran.r-project.org/web/packages/TDCor. Accessed 10 Apr. 2025.
Previous versions and publish date:
0.1-1 (2015-04-18 17:19)
Other packages that cited TDCor R package
View TDCor citation profile
Other R packages that TDCor depends,
imports, suggests or enhances
Complete documentation for TDCor
Functions, R codes and Examples using
the TDCor R package
Some associated functions: CalculateDPI . CalculateTPI . LR_dataset . TDCOR . TDCor-package . TF . UpdateDPI . UpdateTPI . clean.at . draw.profile . estimate.delay . l_genes . l_names . l_prior . shortest.path . times .
Some associated R codes: CalculateDPI.R . CalculateTPI.R . TDCOR.R . UpdateDPI.R . UpdateTPI.R . clean.at.R . cor.data.R . cor.delay.R . df_TDCOR.R . diamonds.filter.R . directness.index.R . dpi.bs.R . dpi.index.R . draw.profile.R . entry.points.R . estimate.delay.R . estimate.delay.cor.R . estimate.multi.delay.cor.R . intersect.R . isr.index.R . local.max.R . local.min.R . make.groups.R . min.element.R . minto0.R . minto0maxto1.R . norm.data.R . overlap.index.R . prediction_L_norm.R . prediction_doubleL_norm.R . prediction_multiL_ff_norm.R . shortest.path.R . ssq.delay.R . substract.R . table.nw.R . to.bool.R . tpi.bs.R . tpi.index.R . triangles.filter.R . Full TDCor package functions and examples
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