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TDAstats
View on CRAN: Click
here
Download and install TDAstats package within the R console
Install from CRAN:
install.packages("TDAstats")
Install from Github:
library("remotes")
install_github("cran/TDAstats")
Install by package version:
library("remotes")
install_version("TDAstats", "0.4.1")
Attach the package and use:
library("TDAstats")
Maintained by
Raoul Wadhwa
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-20
Latest Update: 2019-12-12
Description:
A comprehensive toolset for any useR conducting topological data analysis, specifically via the calculation of persistent homology in a Vietoris-Rips complex. The tools this package currently provides can be conveniently split into three main sections: (1) calculating persistent homology; (2) conducting statistical inference on persistent homology calculations; (3) visualizing persistent homology and statistical inference. The published form of TDAstats can be found in Wadhwa et al. (2018) <doi:10.21105/joss.00860>. For a general background on computing persistent homology for topological data analysis, see Otter et al. (2017) <doi:10.1140/epjds/s13688-017-0109-5>. To learn more about how the permutation test is used for nonparametric statistical inference in topological data analysis, read Robinson & Turner (2017) <doi:10.1007/s41468-017-0008-7>. To learn more about how TDAstats calculates persistent homology, you can visit the GitHub repository for Ripser, the software that works behind the scenes at <https://github.com/Ripser/ripser>. This package has been published as Wadhwa et al. (2018) <doi:10.21105/joss.00860>.
How to cite:
Raoul Wadhwa (2018). TDAstats: Pipeline for Topological Data Analysis. R package version 0.4.1, https://cran.r-project.org/web/packages/TDAstats. Accessed 05 Jan. 2025.
Previous versions and publish date:
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Complete documentation for TDAstats
Functions, R codes and Examples using
the TDAstats R package
Some associated functions: TDAstats . calculate_homology . circle2d . id_significant . permutation_test . phom.dist . plot_barcode . plot_persist . sphere3d . unif2d . unif3d .
Some associated R codes: RcppExports.R . TDAstats.R . calculate.R . data.R . inference.R . utility.R . visuals.R . zzz.R . Full TDAstats package functions and examples
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