Other packages > Find by keyword >

TDA  

Statistical Tools for Topological Data Analysis
View on CRAN: Click here


Download and install TDA package within the R console
Install from CRAN:
install.packages("TDA")

Install from Github:
library("remotes")
install_github("cran/TDA")

Install by package version:
library("remotes")
install_version("TDA", "1.9.4")



Attach the package and use:
library("TDA")
Maintained by
Jisu Kim
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-03-11
Latest Update: 2025-02-02
Description:
Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128>for analyzing the statistical significance of persistent homology features.
How to cite:
Jisu Kim (2021). TDA: Statistical Tools for Topological Data Analysis. R package version 1.9.4, https://cran.r-project.org/web/packages/TDA. Accessed 08 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:27), 1.7.5 (2021-03-11 09:00), 1.7.7 (2021-03-30 13:50), 1.8.2 (2022-01-06 00:20), 1.8.5 (2022-02-01 09:00), 1.8.6 (2022-03-10 15:30), 1.8.7 (2022-03-30 00:00), 1.8.8 (2022-10-30 22:19), 1.9.1 (2024-01-24 16:42), 1.9 (2023-02-04 19:42)
Other packages that cited TDA R package
View TDA citation profile
Other R packages that TDA depends, imports, suggests or enhances
Complete documentation for TDA
Functions, R codes and Examples using the TDA R package
Some associated functions: TDA-internal . TDA-package . alphaComplexDiag . alphaComplexFiltration . alphaShapeDiag . alphaShapeFiltration . bootstrapBand . bootstrapDiagram . bottleneck . circleUnif . clusterTree . distFct . dtm . filtrationDiag . funFiltration . gridDiag . gridFiltration . hausdInterval . kde . kernelDist . knnDE . landscape . maxPersistence . multipBootstrap . plot.clusterTree . plot.diagram . plot.maxPersistence . ripsDiag . ripsFiltration . silhouette . sphereUnif . summary.diagram . torusUnif . wasserstein . 
Some associated R codes: RcppExports.R . alphaComplexDiag.R . alphaComplexFiltration.R . alphaShapeDiag.R . alphaShapeFiltration.R . bootstrapBand.R . bootstrapDiagram.R . bottleneck.R . circleUnif.R . clusterTree.R . distFct.R . dtm.R . filtrationDiag.R . findKtree.R . funFiltration.R . gridBy.R . gridDiag.R . gridFiltration.R . hausdInterval.R . kde.R . kernelDist.R . knnDE.R . landscape.R . maxPersistence.R . multipBootstrap.R . plot.clusterTree.R . plot.diagram.R . plot.maxPersistence.R . plotRule.R . print.clusterTree.R . print.diagram.R . print.maxPersistence.R . print.summary.diagram.R . print.summary.maxPersistence.R . rMultinom.R . ripsDiag.R . ripsFiltration.R . silhouette.R . siloF.R . sphereUnif.R . summary.diagram.R . summary.maxPersistence.R . torusUnif.R . wasserstein.R .  Full TDA package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

Morpho  
Calculations and Visualisations Related to Geometric Morphometrics
A toolset for Geometric Morphometrics and mesh processing. This includes (among other stuff) mesh d ...
Download / Learn more Package Citations See dependency  
skewt  
The Skewed Student-t Distribution
Density, distribution function, quantile function and random generation for the skewed t distributio ...
Download / Learn more Package Citations See dependency  
box  
Write Reusable, Composable and Modular R Code
A modern module system for R. Organise code into hierarchical, composable, reusable modules, and us ...
Download / Learn more Package Citations See dependency  
FastGaSP  
Fast and Exact Computation of Gaussian Stochastic Process
Implements fast and exact computation of Gaussian stochastic process with the Matern kernel using fo ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
productplots  
Product Plots for R
Framework for visualising tables of counts, proportions and probabilities. The framework is called ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,752

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA