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TDA  

Statistical Tools for Topological Data Analysis
View on CRAN: Click here


Download and install TDA package within the R console
Install from CRAN:
install.packages("TDA")

Install from Github:
library("remotes")
install_github("cran/TDA")

Install by package version:
library("remotes")
install_version("TDA", "1.9.4")



Attach the package and use:
library("TDA")
Maintained by
Jisu Kim
[Scholar Profile | Author Map]
First Published: 2021-03-11
Latest Update: 2023-02-04
Description:
Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128>for analyzing the statistical significance of persistent homology features.
How to cite:
Jisu Kim (2021). TDA: Statistical Tools for Topological Data Analysis. R package version 1.9.4, https://cran.r-project.org/web/packages/TDA. Accessed 29 Apr. 2025.
Previous versions and publish date:
1.7.5 (2021-03-11 09:00), 1.7.7 (2021-03-30 13:50), 1.8.2 (2022-01-06 00:20), 1.8.5 (2022-02-01 09:00), 1.8.6 (2022-03-10 15:30), 1.8.7 (2022-03-30 00:00), 1.8.8 (2022-10-30 22:19), 1.9.1 (2024-01-24 16:42), 1.9 (2023-02-04 19:42)
Other packages that cited TDA R package
View TDA citation profile
Other R packages that TDA depends, imports, suggests or enhances
Complete documentation for TDA
Functions, R codes and Examples using the TDA R package
Some associated functions: TDA-internal . TDA-package . alphaComplexDiag . alphaComplexFiltration . alphaShapeDiag . alphaShapeFiltration . bootstrapBand . bootstrapDiagram . bottleneck . circleUnif . clusterTree . distFct . dtm . filtrationDiag . funFiltration . gridDiag . gridFiltration . hausdInterval . kde . kernelDist . knnDE . landscape . maxPersistence . multipBootstrap . plot.clusterTree . plot.diagram . plot.maxPersistence . ripsDiag . ripsFiltration . silhouette . sphereUnif . summary.diagram . torusUnif . wasserstein . 
Some associated R codes: RcppExports.R . alphaComplexDiag.R . alphaComplexFiltration.R . alphaShapeDiag.R . alphaShapeFiltration.R . bootstrapBand.R . bootstrapDiagram.R . bottleneck.R . circleUnif.R . clusterTree.R . distFct.R . dtm.R . filtrationDiag.R . findKtree.R . funFiltration.R . gridBy.R . gridDiag.R . gridFiltration.R . hausdInterval.R . kde.R . kernelDist.R . knnDE.R . landscape.R . maxPersistence.R . multipBootstrap.R . plot.clusterTree.R . plot.diagram.R . plot.maxPersistence.R . plotRule.R . print.clusterTree.R . print.diagram.R . print.maxPersistence.R . print.summary.diagram.R . print.summary.maxPersistence.R . rMultinom.R . ripsDiag.R . ripsFiltration.R . silhouette.R . siloF.R . sphereUnif.R . summary.diagram.R . summary.maxPersistence.R . torusUnif.R . wasserstein.R .  Full TDA package functions and examples
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