Other packages > Find by keyword >

TDA  

Statistical Tools for Topological Data Analysis
View on CRAN: Click here


Download and install TDA package within the R console
Install from CRAN:
install.packages("TDA")

Install from Github:
library("remotes")
install_github("cran/TDA")

Install by package version:
library("remotes")
install_version("TDA", "1.9.4")



Attach the package and use:
library("TDA")
Maintained by
Jisu Kim
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-03-11
Latest Update: 2025-02-02
Description:
Tools for the statistical analysis of persistent homology and for density clustering. For that, this package provides an R interface for the efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) <doi:10.1214/14-AOS1252> and Chazal et al. (2014) <doi:10.1145/2582112.2582128>for analyzing the statistical significance of persistent homology features.
How to cite:
Jisu Kim (2021). TDA: Statistical Tools for Topological Data Analysis. R package version 1.9.4, https://cran.r-project.org/web/packages/TDA. Accessed 15 Jul. 2026.
Previous versions and publish date:
(2026-07-09 08:27), 1.7.5 (2021-03-11 09:00), 1.7.7 (2021-03-30 13:50), 1.8.2 (2022-01-06 00:20), 1.8.5 (2022-02-01 09:00), 1.8.6 (2022-03-10 15:30), 1.8.7 (2022-03-30 00:00), 1.8.8 (2022-10-30 22:19), 1.9.1 (2024-01-24 16:42), 1.9 (2023-02-04 19:42)
Other packages that cited TDA R package
View TDA citation profile
Other R packages that TDA depends, imports, suggests or enhances
Complete documentation for TDA
Functions, R codes and Examples using the TDA R package
Some associated functions: TDA-internal . TDA-package . alphaComplexDiag . alphaComplexFiltration . alphaShapeDiag . alphaShapeFiltration . bootstrapBand . bootstrapDiagram . bottleneck . circleUnif . clusterTree . distFct . dtm . filtrationDiag . funFiltration . gridDiag . gridFiltration . hausdInterval . kde . kernelDist . knnDE . landscape . maxPersistence . multipBootstrap . plot.clusterTree . plot.diagram . plot.maxPersistence . ripsDiag . ripsFiltration . silhouette . sphereUnif . summary.diagram . torusUnif . wasserstein . 
Some associated R codes: RcppExports.R . alphaComplexDiag.R . alphaComplexFiltration.R . alphaShapeDiag.R . alphaShapeFiltration.R . bootstrapBand.R . bootstrapDiagram.R . bottleneck.R . circleUnif.R . clusterTree.R . distFct.R . dtm.R . filtrationDiag.R . findKtree.R . funFiltration.R . gridBy.R . gridDiag.R . gridFiltration.R . hausdInterval.R . kde.R . kernelDist.R . knnDE.R . landscape.R . maxPersistence.R . multipBootstrap.R . plot.clusterTree.R . plot.diagram.R . plot.maxPersistence.R . plotRule.R . print.clusterTree.R . print.diagram.R . print.maxPersistence.R . print.summary.diagram.R . print.summary.maxPersistence.R . rMultinom.R . ripsDiag.R . ripsFiltration.R . silhouette.R . siloF.R . sphereUnif.R . summary.diagram.R . summary.maxPersistence.R . torusUnif.R . wasserstein.R .  Full TDA package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

gamlss.add  
Extra Additive Terms for Generalized Additive Models for Location Scale and Shape
Interface for extra smooth functions including tensor products, neural networks and decision trees. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
footBayes  
Fitting Bayesian and MLE Football Models
This is the first package allowing for the estimation, visualization and prediction of the most wel ...
Download / Learn more Package Citations See dependency  
pulseTD  
Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq Data and RNA-Seq Data
A tool for analyzing the transcription, processing and degradation rates of genes by 4sU-seq (the Me ...
Download / Learn more Package Citations See dependency  
binhf  
Haar-Fisz Functions for Binomial Data
Binomial Haar-Fisz transforms for Gaussianization as in Nunes and Nason (2009). ...
Download / Learn more Package Citations See dependency  
SECFISH  
Disaggregate Variable Costs
These functions were developed within SECFISH project (Strengthening regional cooperation in the are ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA