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TCGAretriever
View on CRAN: Click
here
Download and install TCGAretriever package within the R console
Install from CRAN:
install.packages("TCGAretriever")
Install from Github:
library("remotes")
install_github("cran/TCGAretriever") Install by package version:
library("remotes")
install_version("TCGAretriever", "1.10.1") Attach the package and use:
library("TCGAretriever")
Maintained by
Damiano Fantini
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-07-13
Latest Update: 2024-01-23
Description:
The Cancer Genome Atlas (TCGA) is a program aimed at improving our understanding of Cancer Biology. Several TCGA Datasets are available online. 'TCGAretriever' helps accessing and downloading TCGA data hosted on 'cBioPortal' via its Web Interface (see <https://www.cbioportal.org/> for more information).
How to cite:
Damiano Fantini (2016). TCGAretriever: Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data. R package version 1.10.1, https://cran.r-project.org/web/packages/TCGAretriever. Accessed 13 Mar. 2026.
Previous versions and publish date:
Other packages that cited TCGAretriever R package
View TCGAretriever citation profile
Other R packages that TCGAretriever depends,
imports, suggests or enhances
Complete documentation for TCGAretriever
Functions, R codes and Examples using
the TCGAretriever R package
Some associated functions: TCGAretriever-package . basic_tcga_query . expand_cases . fetch_all_tcgadata . get_cancer_studies . get_cancer_types . get_case_lists . get_clinical_data . get_ext_mutation . get_genetic_profiles . get_profile_data . get_protein_data . get_protein_info . make_groups .
Some associated R codes: TCGAretr_scr.R . Full TCGAretriever package functions and examples
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