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TBRDist  

Rearrangement Distances Between Unrooted Phylogenetic Trees
View on CRAN: Click here


Download and install TBRDist package within the R console
Install from CRAN:
install.packages("TBRDist")

Install from Github:
library("remotes")
install_github("cran/TBRDist")

Install by package version:
library("remotes")
install_version("TBRDist", "1.0.2")



Attach the package and use:
library("TBRDist")
Maintained by
Martin R. Smith
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-07-01
Latest Update: 2020-09-17
Description:
Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) <doi:10.48550/arXiv.1511.07529>.
How to cite:
Martin R. Smith (2020). TBRDist: Rearrangement Distances Between Unrooted Phylogenetic Trees. R package version 1.0.2, https://cran.r-project.org/web/packages/TBRDist. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.0 (2020-07-01 14:00), 1.0.1 (2020-07-07 18:00)
Other packages that cited TBRDist R package
View TBRDist citation profile
Other R packages that TBRDist depends, imports, suggests or enhances
Complete documentation for TBRDist
Functions, R codes and Examples using the TBRDist R package
Some associated functions: TreeRearrangementDistances . dot-PrepareTrees . internals . 
Some associated R codes: RcppExports.R . uspr.R . zzz.R .  Full TBRDist package functions and examples
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