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TBEST  

Tree Branches Evaluated Statistically for Tightness
View on CRAN: Click here


Download and install TBEST package within the R console
Install from CRAN:
install.packages("TBEST")

Install from Github:
library("remotes")
install_github("cran/TBEST")

Install by package version:
library("remotes")
install_version("TBEST", "5.2")



Attach the package and use:
library("TBEST")
Maintained by
Guoli Sun
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2013-11-17
Latest Update: 2022-05-24
Description:
Our method introduces mathematically well-defined measures for tightness of branches in a hierarchical tree. Statistical significance of the findings is determined, for all branches of the tree, by performing permutation tests, optionally with generalized Pareto p-value estimation.
How to cite:
Guoli Sun (2013). TBEST: Tree Branches Evaluated Statistically for Tightness. R package version 5.2, https://cran.r-project.org/web/packages/TBEST. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0 (2013-11-17 19:58), 1.2 (2014-01-17 18:27), 1.4 (2014-02-24 18:22), 3.0 (2014-05-30 21:08), 5.0 (2014-12-29 17:56)
Other packages that cited TBEST R package
View TBEST citation profile
Other R packages that TBEST depends, imports, suggests or enhances
Complete documentation for TBEST
Functions, R codes and Examples using the TBEST R package
Some associated functions: LeafContent . PartitionTree . SigTree . T10 . best . leukemia . partition . plot.best . 
Some associated R codes: BootTree.R . LeafContent.R . PartitionTree.R . Pgpd.R . Ppermest_opt.R . Pvalue.R . RandTail.R . RandTree.R . SigTree.R . TreeStat.R . bestmatch.R . bestmatchl.R . byfactor.R . hc2axes.R . nll.R . plot.best.R . treetext.R .  Full TBEST package functions and examples
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