Other packages > Find by keyword >

TANDEM  

A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data Types
View on CRAN: Click here


Download and install TANDEM package within the R console
Install from CRAN:
install.packages("TANDEM")

Install from Github:
library("remotes")
install_github("cran/TANDEM")

Install by package version:
library("remotes")
install_version("TANDEM", "1.0.3")



Attach the package and use:
library("TANDEM")
Maintained by
Nanne Aben
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-06-08
Latest Update: 2019-11-25
Description:
A two-stage regression method that can be used when various input data types are correlated, for example gene expression and methylation in drug response prediction. In the first stage it uses the upstream features (such as methylation) to predict the response variable (such as drug response), and in the second stage it uses the downstream features (such as gene expression) to predict the residuals of the first stage. In our manuscript (Aben et al., 2016, <doi:10.1093/bioinformatics/btw449>), we show that using TANDEM prevents the model from being dominated by gene expression and that the features selected by TANDEM are more interpretable.
How to cite:
Nanne Aben (2016). TANDEM: A Two-Stage Approach to Maximize Interpretability of Drug Response Models Based on Multiple Molecular Data Types. R package version 1.0.3, https://cran.r-project.org/web/packages/TANDEM. Accessed 26 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:27), 0.9.1 (2016-06-08 11:46), 0.9.2 (2016-07-11 19:01), 0.9.3 (2016-07-13 10:24), 1.0.0 (2016-09-20 00:59), 1.0.1 (2017-04-07 14:33), 1.0.2 (2017-06-15 15:40)
Other packages that cited TANDEM R package
View TANDEM citation profile
Other R packages that TANDEM depends, imports, suggests or enhances
Complete documentation for TANDEM
Functions, R codes and Examples using the TANDEM R package
Some associated functions: coef.tandem . example_data . nested.cv . predict.tandem . relative.contributions . tandem . 
Some associated R codes: data.R . functions.R .  Full TANDEM package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

PCADSC  
Tools for Principal Component Analysis-Based Data Structure Comparisons
A suite of non-parametric, visual tools for assessing differences in data structures for two datase ...
Download / Learn more Package Citations See dependency  
clinUtils  
General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
leafgl  
High-Performance 'WebGl' Rendering for Package 'leaflet'
Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript l ...
Download / Learn more Package Citations See dependency  
ncodeR  
Techniques for Automated Classifiers
A set of techniques that can be used to develop, validate, and implement automated classifiers. A po ...
Download / Learn more Package Citations See dependency  
RCytoGPS  
Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then imp ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA