Other packages > Find by keyword >

SweepDiscovery  

Selective Sweep Discovery Tool
View on CRAN: Click here


Download and install SweepDiscovery package within the R console
Install from CRAN:
install.packages("SweepDiscovery")

Install from Github:
library("remotes")
install_github("cran/SweepDiscovery")

Install by package version:
library("remotes")
install_version("SweepDiscovery", "0.1.1")



Attach the package and use:
library("SweepDiscovery")
Maintained by
Abhik Sarkar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-12-14
Latest Update: 2023-12-14
Description:
Selective sweep is a biological phenomenon in which genetic variation between neighboring beneficial mutant alleles is swept away due to the effect of genetic hitchhiking. Detection of selective sweep is not well acquainted as well as it is a laborious job. This package is a user friendly approach for detecting selective sweep in genomic regions. It uses a Random Forest based machine learning approach to predict selective sweep from VCF files as an input. Input of this function, train data and new data, can be computed using the project <https://github.com/AbhikSarkar1999/SweepDiscovery> in 'GitHub'. This package has been developed by using the concept ofPavlidis and Alachiotis (2017) <doi:10.1186/s40709-017-0064-0>.
How to cite:
Abhik Sarkar (2023). SweepDiscovery: Selective Sweep Discovery Tool. R package version 0.1.1, https://cran.r-project.org/web/packages/SweepDiscovery. Accessed 09 Mar. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited SweepDiscovery R package
View SweepDiscovery citation profile
Other R packages that SweepDiscovery depends, imports, suggests or enhances
Complete documentation for SweepDiscovery
Functions, R codes and Examples using the SweepDiscovery R package
Full SweepDiscovery package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

rzentra  
Client for the 'ZENTRA Cloud' API
Provides functionality to read settings, statuses and readings of weather stations from the 'ZENTRA ...
Download / Learn more Package Citations See dependency  
pooling  
Fit Poolwise Regression Models
Functions for calculating power and fitting regression models in studies where a biomarker is measur ...
Download / Learn more Package Citations See dependency  
Rgb  
The R Genome Browser
Classes and methods to efficiently handle (slice, annotate, draw ...) genomic features (such as gene ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
ggblanket  
Simplify 'ggplot2' Visualisation
Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions. ...
Download / Learn more Package Citations See dependency  

26,293

R Packages

223,360

Dependencies

70,376

Author Associations

26,294

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA