Other packages > Find by keyword >

SweepDiscovery  

Selective Sweep Discovery Tool
View on CRAN: Click here


Download and install SweepDiscovery package within the R console
Install from CRAN:
install.packages("SweepDiscovery")

Install from Github:
library("remotes")
install_github("cran/SweepDiscovery")

Install by package version:
library("remotes")
install_version("SweepDiscovery", "0.1.1")



Attach the package and use:
library("SweepDiscovery")
Maintained by
Abhik Sarkar
[Scholar Profile | Author Map]
First Published: 2023-12-14
Latest Update: 2023-12-14
Description:
Selective sweep is a biological phenomenon in which genetic variation between neighboring beneficial mutant alleles is swept away due to the effect of genetic hitchhiking. Detection of selective sweep is not well acquainted as well as it is a laborious job. This package is a user friendly approach for detecting selective sweep in genomic regions. It uses a Random Forest based machine learning approach to predict selective sweep from VCF files as an input. Input of this function, train data and new data, can be computed using the project <https://github.com/AbhikSarkar1999/SweepDiscovery> in 'GitHub'. This package has been developed by using the concept ofPavlidis and Alachiotis (2017) <doi:10.1186/s40709-017-0064-0>.
How to cite:
Abhik Sarkar (2023). SweepDiscovery: Selective Sweep Discovery Tool. R package version 0.1.1, https://cran.r-project.org/web/packages/SweepDiscovery. Accessed 25 Feb. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited SweepDiscovery R package
View SweepDiscovery citation profile
Other R packages that SweepDiscovery depends, imports, suggests or enhances
Complete documentation for SweepDiscovery
Functions, R codes and Examples using the SweepDiscovery R package
Full SweepDiscovery package functions and examples
Downloads during the last 30 days
01/2601/2701/2801/2901/3001/3102/0102/0202/0302/0402/0502/0602/0702/0802/0902/1002/1102/1202/1302/1402/1502/1602/1702/1802/1902/2002/2102/2202/23Downloads for SweepDiscovery0246810121416182022TrendBars

Today's Hot Picks in Authors and Packages

POMaSPU  
Adaptive Association Tests for Multiple Phenotypes using Proportional Odds Model (POM-aSPU)
POM-aSPU test evaluates an association between an ordinal response and multiple phenotypes, for deta ...
Download / Learn more Package Citations See dependency  
IQCC  
Improved Quality Control Charts
Builds statistical control charts with exact limits for univariate and multivariate cases. ...
Download / Learn more Package Citations See dependency  
grove  
Wavelet Functional ANOVA Through Markov Groves
Functional denoising and functional ANOVA through wavelet-domain Markov groves. Fore more details s ...
Download / Learn more Package Citations See dependency  
Maintainer: Li Ma (view profile)
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
iDOVE  
Durability of Vaccine Efficacy Against SARS-CoV-2 Infection
Implements a nonparametric maximum likelihood method for assessing potentially time-varying vaccine ...
Download / Learn more Package Citations See dependency  
downloader  
Download Files over HTTP and HTTPS
Provides a wrapper for the download.file function, making it possible to download files over HTTPS ...
Download / Learn more Package Citations See dependency  

23,762

R Packages

206,309

Dependencies

64,478

Author Associations

23,713

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA