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SuperCell  

Simplification of scRNA-Seq Data by Merging Together Similar Cells
View on CRAN: Click here


Download and install SuperCell package within the R console
Install from CRAN:
install.packages("SuperCell")

Install from Github:
library("remotes")
install_github("cran/SuperCell")

Install by package version:
library("remotes")
install_version("SuperCell", "1.0.1")



Attach the package and use:
library("SuperCell")
Maintained by
Leonard Herault
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-05
Latest Update: 2024-09-05
Description:
Aggregates large single-cell data into metacell dataset by merging together gene expression of very similar cells. 'SuperCell' uses 'velocyto.R' <doi:10.1038/s41586-018-0414-6> <https://github.com/velocyto-team/velocyto.R> for RNA velocity. We also recommend installing 'scater' Bioconductor package <doi:10.18129/B9.bioc.scater> <https://bioconductor.org/packages/release/bioc/html/scater.html>.
How to cite:
Leonard Herault (2024). SuperCell: Simplification of scRNA-Seq Data by Merging Together Similar Cells. R package version 1.0.1, https://cran.r-project.org/web/packages/SuperCell. Accessed 03 Jan. 2025.
Previous versions and publish date:
1.0 (2024-09-05 17:30)
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Complete documentation for SuperCell
Functions, R codes and Examples using the SuperCell R package
Full SuperCell package functions and examples
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