Other packages > Find by keyword >

SubtypeDrug  

Prioritization of Candidate Cancer Subtype Specific Drugs
View on CRAN: Click here


Download and install SubtypeDrug package within the R console
Install from CRAN:
install.packages("SubtypeDrug")

Install from Github:
library("remotes")
install_github("cran/SubtypeDrug")

Install by package version:
library("remotes")
install_version("SubtypeDrug", "0.1.9")



Attach the package and use:
library("SubtypeDrug")
Maintained by
Junwei Han
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-05-16
Latest Update: 2024-01-21
Description:
A systematic biology tool was developed to prioritize cancer subtype-specific drugs by integrating genetic perturbation, drug action, biological pathway, and cancer subtype. The capabilities of this tool include inferring patient-specific subpathway activity profiles in the context of gene expression profiles with subtype labels, calculating differentially expressed subpathways based on cultured human cells treated with drugs in the 'cMap' (connectivity map) database, prioritizing cancer subtype specific drugs according to drug-disease reverse association score based on subpathway, and visualization of results (Castelo (2013) <doi:10.1186/1471-2105-14-7>; Han et al (2019) <doi:10.1093/bioinformatics/btz894>; Lamb and Justin (2006) <doi:10.1126/science.1132939>). Please cite using <doi:10.1093/bioinformatics/btab011>.
How to cite:
Junwei Han (2020). SubtypeDrug: Prioritization of Candidate Cancer Subtype Specific Drugs. R package version 0.1.9, https://cran.r-project.org/web/packages/SubtypeDrug. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.1.0 (2020-05-16 11:30), 0.1.1 (2020-06-26 06:50), 0.1.2 (2020-09-24 13:00), 0.1.3 (2020-11-24 09:30), 0.1.4 (2021-01-22 10:00), 0.1.5 (2021-05-17 10:50), 0.1.6 (2024-01-10 15:23), 0.1.7 (2024-01-21 16:32), 0.1.8 (2024-03-18 07:00)
Other packages that cited SubtypeDrug R package
View SubtypeDrug citation profile
Other R packages that SubtypeDrug depends, imports, suggests or enhances
Complete documentation for SubtypeDrug
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

composits  
Compositional, Multivariate and Univariate Time Series Outlier Ensemble
A compositional multivariate and univariate time series outlier ensemble.It uses the four R packages ...
Download / Learn more Package Citations See dependency  
elect  
Estimation of Life Expectancies Using Multi-State Models
Functions to compute state-specific and marginal life expectancies. The computation is based on a fi ...
Download / Learn more Package Citations See dependency  
Rfast2  
A Collection of Efficient and Extremely Fast R Functions II
A collection of fast statistical and utility functions for data analysis. Functions for regression, ...
Download / Learn more Package Citations See dependency  
wordspace  
Distributional Semantic Models in R
An interactive laboratory for research on distributional semantic models ('DSM', see < ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
LOGANTree  
Tree-Based Models for the Analysis of Log Files from Computer-Based Assessments
Enables researchers to model log-file data from computer-based assessments using machine-learning te ...
Download / Learn more Package Citations See dependency  
Maintainer: Qi Qin (view profile)

23,394

R Packages

201,798

Dependencies

63,416

Author Associations

23,395

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA