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StrainRanking
View on CRAN: Click
here
Download and install StrainRanking package within the R console
Install from CRAN:
install.packages("StrainRanking")
Install from Github:
library("remotes")
install_github("cran/StrainRanking")
Install by package version:
library("remotes")
install_version("StrainRanking", "1.2")
Attach the package and use:
library("StrainRanking")
Maintained by
Samuel Soubeyrand
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.StrainRanking . StrainRanking results . StrainRanking.pdf . StrainRanking_1.2.tar.gz . StrainRanking_1.2.zip . StrainRanking_1.2.zip . StrainRanking_1.2.zip . StrainRanking_1.2.tgz . StrainRanking_1.2.tgz . StrainRanking_1.2.tgz . StrainRanking_1.2.tgz . StrainRanking archive . https://CRAN.R-project.org/package=StrainRanking .
First Published: 2013-07-23
Latest Update: 2017-11-29
Description:
Regression-based ranking of pathogen strains with respect to their contributions to natural epidemics, using demographic and genetic data sampled in the curse of the epidemics. This package also includes the GMCPIC test.
How to cite:
Samuel Soubeyrand (2013). StrainRanking: Ranking of Pathogen Strains. R package version 1.2, https://cran.r-project.org/web/packages/StrainRanking. Accessed 23 Apr. 2025.
Other packages that cited StrainRanking R package
View StrainRanking citation profile
Other R packages that StrainRanking depends,
imports, suggests or enhances
Complete documentation for StrainRanking
Functions, R codes and Examples using
the StrainRanking R package
Some associated functions: DGobj-class . DGobj.rawdata . DGobj.simul.mechanistic . DGobj.simul.regression . PathogenCompositionMoryzaeChina . PathogenCompositionMoryzaeMadagascar . PathogenCompositionPsyringaeClades . PathogenCompositionPsyringaeHaplotypes . PathogenCompositionPsyringaePhylogroups . PathogenCompositionPtriticinaGalibier . PathogenCompositionPtriticinaKalango . StrainRanking-package . generation.alpha.3strains . gmcpic.test . powderymildew . ranking.strains .
Some associated R codes: DGobj.R . DGobj.rawData.R . DGobj.simulMechanistic.R . DGobj.simulRegression.R . functions.R . functions2.R . rankingStrains.R . Full StrainRanking package functions and examples
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