Other packages > Find by keyword >

SparseMDC  

Implementation of SparseMDC Algorithm
View on CRAN: Click here


Download and install SparseMDC package within the R console
Install from CRAN:
install.packages("SparseMDC")

Install from Github:
library("remotes")
install_github("cran/SparseMDC")

Install by package version:
library("remotes")
install_version("SparseMDC", "0.99.5")



Attach the package and use:
library("SparseMDC")
Maintained by
Jun Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-08-02
Latest Update: 2018-08-02
Description:
Implements the algorithm described in Barron, M., and Li, J. (Not yet published). This algorithm clusters samples from multiple ordered populations, links the clusters across the conditions and identifies marker genes for these changes. The package was designed for scRNA-Seq data but is also applicable to many other data types, just replace cells with samples and genes with variables. The package also contains functions for estimating the parameters for SparseMDC as outlined in the paper. We recommend that users further select their marker genes using the magnitude of the cluster centers.
How to cite:
Jun Li (2018). SparseMDC: Implementation of SparseMDC Algorithm. R package version 0.99.5, https://cran.r-project.org/web/packages/SparseMDC
Previous versions and publish date:
No previous versions
Other packages that cited SparseMDC R package
View SparseMDC citation profile
Other R packages that SparseMDC depends, imports, suggests or enhances
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

stagePop  
Modelling the Population Dynamics of a Stage-Structured Species in Continuous Time
Provides facilities to implement and run population models of stage-structured species... ...
Download / Learn more Package Citations See dependency  
MatrixEQTL  
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
Matrix eQTL is designed for fast eQTL analysis on large datasets. Matrix eQTL can test for associat ...
Download / Learn more Package Citations See dependency  
gclus  
Clustering Graphics
Orders panels in scatterplot matrices and parallel coordinate displays by some merit index. Package ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
ismev  
An Introduction to Statistical Modeling of Extreme Values
Functions to support the computations carried out in `An Introduction to Statistical Modeling of Ex ...
Download / Learn more Package Citations See dependency  
CompoundEvents  
Statistical Modeling of Compound Events
Tools for extracting occurrences, assessing potential driving factors, predicting occurrences, and q ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns