Other packages > Find by keyword >

SparseMDC  

Implementation of SparseMDC Algorithm
View on CRAN: Click here


Download and install SparseMDC package within the R console
Install from CRAN:
install.packages("SparseMDC")

Install from Github:
library("remotes")
install_github("cran/SparseMDC")

Install by package version:
library("remotes")
install_version("SparseMDC", "0.99.5")



Attach the package and use:
library("SparseMDC")
Maintained by
Jun Li
[Scholar Profile | Author Map]
First Published: 2018-08-02
Latest Update: 2018-08-02
Description:
Implements the algorithm described in Barron, M., and Li, J. (Not yet published). This algorithm clusters samples from multiple ordered populations, links the clusters across the conditions and identifies marker genes for these changes. The package was designed for scRNA-Seq data but is also applicable to many other data types, just replace cells with samples and genes with variables. The package also contains functions for estimating the parameters for SparseMDC as outlined in the paper. We recommend that users further select their marker genes using the magnitude of the cluster centers.
How to cite:
Jun Li (2018). SparseMDC: Implementation of SparseMDC Algorithm. R package version 0.99.5, https://cran.r-project.org/web/packages/SparseMDC. Accessed 31 Mar. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited SparseMDC R package
View SparseMDC citation profile
Other R packages that SparseMDC depends, imports, suggests or enhances
Complete documentation for SparseMDC
Downloads during the last 30 days
03/0103/0203/0303/0403/0503/0603/0703/0803/1003/1103/1203/1303/1403/1503/1603/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/29Downloads for SparseMDC12345678910TrendBars

Today's Hot Picks in Authors and Packages

tclust  
Robust Trimmed Clustering
Provides functions for robust trimmed clustering. The methods are described in Garcia-Escudero (200 ...
Download / Learn more Package Citations See dependency  
PermutationR  
Conduct Permutation Analysis of Variance in R
Conduct permutation One-Way or Two-Way Analysis of Variance in R. Use different permutation types fo ...
Download / Learn more Package Citations See dependency  
whitebox  
'WhiteboxTools' R Frontend
An R frontend for the 'WhiteboxTools' library, which is an advanced geospatial data analysis platfor ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
equivUMP  
Uniformly Most Powerful Invariant Tests of Equivalence
Implementation of uniformly most powerful invariant equivalence tests for one- and two-sample probl ...
Download / Learn more Package Citations See dependency  
bodycomp  
Percent Body Fat Values Using Anthropometric Prediction Equations
Skinfold measurements is one of the most popular and practical methods for estimating percent body f ...
Download / Learn more Package Citations See dependency  

23,842

R Packages

207,311

Dependencies

64,420

Author Associations

23,781

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA