Other packages > Find by keyword >

SparseMDC  

Implementation of SparseMDC Algorithm
View on CRAN: Click here


Download and install SparseMDC package within the R console
Install from CRAN:
install.packages("SparseMDC")

Install from Github:
library("remotes")
install_github("cran/SparseMDC")

Install by package version:
library("remotes")
install_version("SparseMDC", "0.99.5")



Attach the package and use:
library("SparseMDC")
Maintained by
Jun Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-08-02
Latest Update: 2018-08-02
Description:
Implements the algorithm described in Barron, M., and Li, J. (Not yet published). This algorithm clusters samples from multiple ordered populations, links the clusters across the conditions and identifies marker genes for these changes. The package was designed for scRNA-Seq data but is also applicable to many other data types, just replace cells with samples and genes with variables. The package also contains functions for estimating the parameters for SparseMDC as outlined in the paper. We recommend that users further select their marker genes using the magnitude of the cluster centers.
How to cite:
Jun Li (2018). SparseMDC: Implementation of SparseMDC Algorithm. R package version 0.99.5, https://cran.r-project.org/web/packages/SparseMDC. Accessed 07 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited SparseMDC R package
View SparseMDC citation profile
Other R packages that SparseMDC depends, imports, suggests or enhances
Complete documentation for SparseMDC
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

keep  
Arrays with Better Control over Dimension Dropping
Provides arrays with flexible control over dimension dropping when subscripting. ...
Download / Learn more Package Citations See dependency  
roxygen2  
In-Line Documentation for R
Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted com ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
xmlr  
Read, Write and Work with 'XML' Data
'XML' package for creating and reading and manipulating 'XML', with an object model based on 'Refere ...
Download / Learn more Package Citations See dependency  
gRain  
Bayesian Networks
Probability propagation in graphical independence networks, also known as Bayesian networks or prob ...
Download / Learn more Package Citations See dependency  
embryogrowth  
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See ...
Download / Learn more Package Citations See dependency  

27,372

R Packages

233,548

Dependencies

72,820

Author Associations

27,205

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA