Other packages > Find by keyword >

SpaTopic  

Topic Inference to Identify Tissue Architecture in Multiplexed Images
View on CRAN: Click here


Download and install SpaTopic package within the R console
Install from CRAN:
install.packages("SpaTopic")

Install from Github:
library("remotes")
install_github("cran/SpaTopic")

Install by package version:
library("remotes")
install_version("SpaTopic", "1.2.0")



Attach the package and use:
library("SpaTopic")
Maintained by
Xiyu Peng
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-01-17
Latest Update: 2025-03-03
Description:
A novel spatial topic model to integrate both cell type and spatial information to identify the complex spatial tissue architecture on multiplexed tissue images without human intervention. The Package implements a Collapsed Gibbs sampling algorithm for inference. 'SpaTopic' is scalable to large-scale image datasets without extracting neighborhood information for every single cell. For more details on the methodology, see <https://xiyupeng.github.io/SpaTopic/>.
How to cite:
Xiyu Peng (2024). SpaTopic: Topic Inference to Identify Tissue Architecture in Multiplexed Images. R package version 1.2.0, https://cran.r-project.org/web/packages/SpaTopic. Accessed 18 Sep. 2026.
Previous versions and publish date:
(2026-07-09 08:26), 1.0.1 (2024-01-17 19:42), 1.1.0 (2024-04-23 01:50), 1.2.0 (2025-03-03 18:00)
Other packages that cited SpaTopic R package
View SpaTopic citation profile
Other R packages that SpaTopic depends, imports, suggests or enhances
Complete documentation for SpaTopic
Functions, R codes and Examples using the SpaTopic R package
Full SpaTopic package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

injectoR  
R Dependency Injection
R dependency injection framework. Dependency injection allows a program design to follow the depend ...
Download / Learn more Package Citations See dependency  
hmeasure  
The H-Measure and Other Scalar Classification Performance Metrics
Classification performance metrics that are derived from the ROC curve of a classifier. The package ...
Download / Learn more Package Citations See dependency  
eyelinker  
Import ASC Files from EyeLink Eye Trackers
Imports plain-text ASC data files from EyeLink eye trackers into (relatively) tidy data frames for ...
Download / Learn more Package Citations See dependency  
data360r  
Wrapper for 'TCdata360' and 'Govdata360' API
Makes it easy to engage with the Application Program Interface (API) of the 'TCdata360' and 'Govdat ...
Download / Learn more Package Citations See dependency  
downlit  
Syntax Highlighting and Automatic Linking
Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pk ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  

28,565

R Packages

239,283

Dependencies

75,677

Author Associations

28,566

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA