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SpaCCI
View on CRAN: Click
here
Download and install SpaCCI package within the R console
Install from CRAN:
install.packages("SpaCCI")
Install from Github:
library("remotes")
install_github("cran/SpaCCI")
Install by package version:
library("remotes")
install_version("SpaCCI", "1.0.2")
Attach the package and use:
library("SpaCCI")
Maintained by
Li-Ting Ku
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-30
Latest Update: 2024-09-30
Description:
Provides tools for analyzing spatial cell-cell interactions based on ligand-receptor pairs, including functions for local, regional, and global analysis using spatial transcriptomics data. Integrates with databases like 'CellChat' <http://www.cellchat.org/>, 'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker' <https://www.rna-society.org/cellinker/>, 'ICELLNET' <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB' <https://humanconnectome.org/software/connectomedb/> to identify ligand-receptor pairs, visualize interactions through heatmaps, chord diagrams, and infer interactions on different spatial scales.
How to cite:
Li-Ting Ku (2024). SpaCCI: Spatially Aware Cell-Cell Interaction Analysis. R package version 1.0.2, https://cran.r-project.org/web/packages/SpaCCI. Accessed 23 Nov. 2024.
Previous versions and publish date:
1.0 (2024-09-30 12:30)
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