Other packages > Find by keyword >

SpaCCI  

Spatially Aware Cell-Cell Interaction Analysis
View on CRAN: Click here


Download and install SpaCCI package within the R console
Install from CRAN:
install.packages("SpaCCI")

Install from Github:
library("remotes")
install_github("cran/SpaCCI")

Install by package version:
library("remotes")
install_version("SpaCCI", "1.0.5")



Attach the package and use:
library("SpaCCI")
Maintained by
Li-Ting Ku
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-09-30
Latest Update: 2025-05-12
Description:
Provides tools for analyzing spatial cell-cell interactions based on ligand-receptor pairs, including functions for local, regional, and global analysis using spatial transcriptomics data. Integrates with databases like 'CellChat' <http://www.cellchat.org/>, 'CellPhoneDB' <https://www.cellphonedb.org/>, 'Cellinker' <https://www.rna-society.org/cellinker/>, 'ICELLNET' <https://github.com/soumelis-lab/ICELLNET>, and 'ConnectomeDB' <https://humanconnectome.org/software/connectomedb/> to identify ligand-receptor pairs, visualize interactions through heatmaps, chord diagrams, and infer interactions on different spatial scales.
How to cite:
Li-Ting Ku (2024). SpaCCI: Spatially Aware Cell-Cell Interaction Analysis. R package version 1.0.5, https://cran.r-project.org/web/packages/SpaCCI. Accessed 24 Oct. 2026.
Previous versions and publish date:
(2026-07-09 08:26), 1.0.2 (2024-10-24 12:31), 1.0.3 (2025-01-19 00:10), 1.0.4 (2025-05-12 20:30), 1.0 (2024-09-30 12:30)
Other packages that cited SpaCCI R package
View SpaCCI citation profile
Other R packages that SpaCCI depends, imports, suggests or enhances
Complete documentation for SpaCCI
Functions, R codes and Examples using the SpaCCI R package
Full SpaCCI package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

forecastHybrid  
Convenient Functions for Ensemble Time Series Forecasts
Convenient functions for ensemble forecasts in R combining approaches from the 'forecast' package. ...
Download / Learn more Package Citations See dependency  
climwin  
Climate Window Analysis
Contains functions to detect and visualise periods of climate sensitivity (climate windows) for a g ...
Download / Learn more Package Citations See dependency  
magicfor  
Magic Functions to Obtain Results from for Loops
Magic functions to obtain results from for loops. ...
Download / Learn more Package Citations See dependency  
givitiR  
The GiViTI Calibration Test and Belt
Functions to assess the calibration of logistic regression models with the GiViTI (Gruppo Italiano p ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
FDRsampsize  
Compute Sample Size that Meets Requirements for Average Power and FDR
Defines a collection of functions to compute average power and sample size for studies that use the ...
Download / Learn more Package Citations See dependency  

29,080

R Packages

247,686

Dependencies

77,281

Author Associations

29,081

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA