Other packages > Find by keyword >

SpNMF  

Supervised NMF
View on CRAN: Click here


Download and install SpNMF package within the R console
Install from CRAN:
install.packages("SpNMF")

Install from Github:
library("remotes")
install_github("cran/SpNMF")

Install by package version:
library("remotes")
install_version("SpNMF", "0.1.1")



Attach the package and use:
library("SpNMF")
Maintained by
Yun Cai
[Scholar Profile | Author Map]
First Published: 2018-10-01
Latest Update: 2018-10-03
Description:
Non-negative Matrix Factorization(NMF) is a powerful tool for identifying the key features of microbial communities and a dimension-reduction method. When we are interested in the differences between the structures of two groups of communities, supervised NMF(Yun Cai, Hong Gu and Tobby Kenney (2017),<doi:10.1186/s40168-017-0323-1>) provides a better way to do this, while retaining all the advantages of NMF – such as interpretability, and being based on a simple biological intuition.
How to cite:
Yun Cai (2018). SpNMF: Supervised NMF. R package version 0.1.1, https://cran.r-project.org/web/packages/SpNMF. Accessed 07 Apr. 2025.
Previous versions and publish date:
0.1.0 (2018-10-01 00:30)
Other packages that cited SpNMF R package
View SpNMF citation profile
Other R packages that SpNMF depends, imports, suggests or enhances
Complete documentation for SpNMF
Functions, R codes and Examples using the SpNMF R package
Some associated functions: chty . getT . spdata . spnmf . 
Some associated R codes: choosing_number_of_types.R . supervised_NMF.R .  Full SpNMF package functions and examples
Downloads during the last 30 days
03/0803/0903/1003/1103/1203/1303/1403/1503/1603/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0404/0504/06Downloads for SpNMF0123456789101112TrendBars

Today's Hot Picks in Authors and Packages

r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
ASMap  
Linkage Map Construction using the MSTmap Algorithm
Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Ha ...
Download / Learn more Package Citations See dependency  
nutriNetwork  
Structure Learning with Copula Graphical Model
Statistical tool for learning the structure of direct associations among variables for continuous d ...
Download / Learn more Package Citations See dependency  
letsR  
Data Handling and Analysis in Macroecology
Handling, processing, and analyzing geographic data on species' distributions and environmental var ...
Download / Learn more Package Citations See dependency  
probout  
Unsupervised Multivariate Outlier Probabilities for Large Datasets
Estimates unsupervised outlier probabilities for multivariate numeric data with many observations fr ...
Download / Learn more Package Citations See dependency  
MetaAnalyser  
An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine
An interactive application to visualise meta-analysis data as a physical weighing machine. The inte ...
Download / Learn more Package Citations See dependency  

24,012

R Packages

207,311

Dependencies

64,867

Author Associations

24,013

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA