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SoupX  

Single Cell mRNA Soup eXterminator
View on CRAN: Click here


Download and install SoupX package within the R console
Install from CRAN:
install.packages("SoupX")

Install from Github:
library("remotes")
install_github("cran/SoupX")

Install by package version:
library("remotes")
install_version("SoupX", "1.6.2")



Attach the package and use:
library("SoupX")
Maintained by
Matthew Daniel Young
[Scholar Profile | Author Map]
First Published: 2020-05-26
Latest Update: 2022-11-01
Description:
Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments.Implements the method described in Young et al. (2018) <doi:10.1101/303727>.
How to cite:
Matthew Daniel Young (2020). SoupX: Single Cell mRNA Soup eXterminator. R package version 1.6.2, https://cran.r-project.org/web/packages/SoupX. Accessed 29 Mar. 2025.
Previous versions and publish date:
1.4.5 (2020-05-26 12:00), 1.4.8 (2020-10-15 13:40), 1.5.0 (2021-01-13 13:40), 1.5.2 (2021-05-17 09:10), 1.6.1 (2022-05-26 11:50)
Other packages that cited SoupX R package
View SoupX citation profile
Other R packages that SoupX depends, imports, suggests or enhances
Complete documentation for SoupX
Downloads during the last 30 days
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