Other packages > Find by keyword >

SoupX  

Single Cell mRNA Soup eXterminator
View on CRAN: Click here


Download and install SoupX package within the R console
Install from CRAN:
install.packages("SoupX")

Install from Github:
library("remotes")
install_github("cran/SoupX")

Install by package version:
library("remotes")
install_version("SoupX", "1.6.2")



Attach the package and use:
library("SoupX")
Maintained by
Matthew Daniel Young
[Scholar Profile | Author Map]
First Published: 2020-05-26
Latest Update: 2022-11-01
Description:
Quantify, profile and remove ambient mRNA contamination (the "soup") from droplet based single cell RNA-seq experiments.Implements the method described in Young et al. (2018) <doi:10.1101/303727>.
How to cite:
Matthew Daniel Young (2020). SoupX: Single Cell mRNA Soup eXterminator. R package version 1.6.2, https://cran.r-project.org/web/packages/SoupX. Accessed 22 Apr. 2025.
Previous versions and publish date:
1.4.5 (2020-05-26 12:00), 1.4.8 (2020-10-15 13:40), 1.5.0 (2021-01-13 13:40), 1.5.2 (2021-05-17 09:10), 1.6.1 (2022-05-26 11:50)
Other packages that cited SoupX R package
View SoupX citation profile
Other R packages that SoupX depends, imports, suggests or enhances
Complete documentation for SoupX
Downloads during the last 30 days
03/2303/2403/2503/2603/2703/2803/2903/3003/3104/0104/0204/0304/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/21Downloads for SoupX1020304050607080TrendBars

Today's Hot Picks in Authors and Packages

GWPR.light  
Geographically Weighted Panel Regression
Geographically weighted panel regression is grounded in a branch of spatial statistics. Using geogra ...
Download / Learn more Package Citations See dependency  
optimStrat  
Choosing the Sample Strategy
Intended to assist in the choice of the sampling strategy to implement in a survey. ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
Qest  
Quantile-Based Estimator
Quantile-based estimators (Q-estimators) can be used to fit any parametric distribution, using its q ...
Download / Learn more Package Citations See dependency  
ino  
Initialization of Numerical Optimization
Analysis of the initialization for numerical optimization of real-valued functions, including likel ...
Download / Learn more Package Citations See dependency  
phylosamp  
Sample Size Calculations for Molecular and Phylogenetic Studies
Implements novel tools for estimating sample sizes needed for phylogenetic studies, including studi ...
Download / Learn more Package Citations See dependency  

24,098

R Packages

207,311

Dependencies

65,069

Author Associations

24,099

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA