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SimReg
View on CRAN: Click
here
Download and install SimReg package within the R console
Install from CRAN:
install.packages("SimReg")
Install from Github:
library("remotes")
install_github("cran/SimReg")
Install by package version:
library("remotes")
install_version("SimReg", "3.4")
Attach the package and use:
library("SimReg")
Maintained by
Daniel Greene
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-08-27
Latest Update: 2021-02-15
Description:
Similarity regression, evaluating the probability of association between sets of ontological terms and binary response vector. A no-association model is compared with one in which the log odds of a true response is linked to the semantic similarity between terms and a latent characteristic ontological profile - 'Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases', Greene et al 2016 <doi:10.1016/j.ajhg.2016.01.008>.
How to cite:
Daniel Greene (2015). SimReg: Similarity Regression. R package version 3.4, https://cran.r-project.org/web/packages/SimReg. Accessed 30 Jan. 2025.
Previous versions and publish date:
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imports, suggests or enhances
Complete documentation for SimReg
Functions, R codes and Examples using
the SimReg R package
Some associated functions: SimReg-package . get_term_marginals . get_terms . log_BF . plot.sim_reg_summary . plot_term_marginals . posterior_prediction . print.sim_reg_output . print.sim_reg_summary . prob_association . sim_reg . sum_log_probs . summary.sim_reg_output . term_marginals .
Some associated R codes: RcppExports.R . generic.R . inference.R . ml.R . phi-priors.R . pick.R . plot.R . prediction.R . Full SimReg package functions and examples
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