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SimRAD  

Simulations to Predict the Number of RAD and GBS Loci
View on CRAN: Click here


Download and install SimRAD package within the R console
Install from CRAN:
install.packages("SimRAD")

Install from Github:
library("remotes")
install_github("cran/SimRAD")

Install by package version:
library("remotes")
install_version("SimRAD", "0.96")



Attach the package and use:
library("SimRAD")
Maintained by
Olivier Lepais
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-02-02
Latest Update: 2016-01-06
Description:
Provides a number of functions to simulate restriction enzyme digestion, library construction and fragments size selection to predict the number of loci expected from most of the Restriction site Associated DNA (RAD) and Genotyping By Sequencing (GBS) approaches. SimRAD estimates the number of loci expected from a particular genome depending on the protocol type and parameters allowing to assess feasibility, multiplexing capacity and the amount of sequencing required.
How to cite:
Olivier Lepais (2014). SimRAD: Simulations to Predict the Number of RAD and GBS Loci. R package version 0.96, https://cran.r-project.org/web/packages/SimRAD. Accessed 10 Apr. 2025.
Previous versions and publish date:
0.93 (2014-02-02 13:21), 0.94 (2014-05-15 16:38), 0.95 (2014-11-24 10:34), 0.96 (2016-01-06 17:22)
Other packages that cited SimRAD R package
View SimRAD citation profile
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