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SimBIID
View on CRAN: Click
here
Download and install SimBIID package within the R console
Install from CRAN:
install.packages("SimBIID")
Install from Github:
library("remotes")
install_github("cran/SimBIID")
Install by package version:
library("remotes")
install_version("SimBIID", "0.2.1")
Attach the package and use:
library("SimBIID")
Maintained by
Trevelyan J. McKinley
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.SimBIID . https://github.com/tjmckinley/SimBIID/issues . https://github.com/tjmckinley/SimBIID . SimBIID results . SimBIID.pdf . SimBIID_0.2.2.tar.gz . SimBIID_0.2.2.zip . SimBIID_0.2.2.zip . SimBIID_0.2.2.zip . SimBIID_0.2.2.tgz . SimBIID_0.2.2.tgz . SimBIID_0.2.2.tgz . SimBIID_0.2.2.tgz . SimBIID archive . https://CRAN.R-project.org/package=SimBIID .
First Published: 2019-08-23
Latest Update: 2021-02-04
Description:
Provides some code to run simulations of state-space models, and then use these in the Approximate Bayesian Computation Sequential Monte Carlo (ABC-SMC) algorithm of Toni et al. (2009) <doi:10.1098/rsif.2008.0172> and a bootstrap particle filter based particle Markov chain Monte Carlo (PMCMC) algorithm (Andrieu et al., 2010 <doi:10.1111/j.1467-9868.2009.00736.x>). Also provides functions to plot and summarise the outputs.
How to cite:
Trevelyan J. McKinley (2019). SimBIID: Simulation-Based Inference Methods for Infectious Disease Models. R package version 0.2.1, https://cran.r-project.org/web/packages/SimBIID. Accessed 18 Apr. 2025.
Previous versions and publish date:
Other packages that cited SimBIID R package
View SimBIID citation profile
Other R packages that SimBIID depends,
imports, suggests or enhances
Complete documentation for SimBIID
Functions, R codes and Examples using
the SimBIID R package
Some associated functions: ABCRef . ABCSMC . PMCMC . SimBIID-package . compileRcpp . ebola . mparseRcpp . plot.ABCSMC . plot.PMCMC . plot.SimBIID_runs . predict.PMCMC . print.ABCSMC . print.PMCMC . print.SimBIID_model . print.SimBIID_runs . run . smallpox . summary.ABCSMC . summary.PMCMC . window.PMCMC .
Some associated R codes: ABCRef.R . ABCSMC.R . PMCMC.R . RcppExports.R . Rcpp_mparse.R . SimBIID-package.R . bisectTols.R . bootStates.R . checkInputs.R . compileRcpp.R . data.R . mparse.R . mparseRcpp.R . plotABC.R . plotPMCMC.R . plotSimBIID_runs.R . predictPMCMC.R . printABC.R . printPMCMC.R . printSimBIID_model.R . printSimBIID_runs.R . run.R . runProp.R . runRef.R . summaryABC.R . summaryPMCMC.R . windowPMCMC.R . zzz.R . Full SimBIID package functions and examples
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