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SignacX
View on CRAN: Click
here
Download and install SignacX package within the R console
Install from CRAN:
install.packages("SignacX")
Install from Github:
library("remotes")
install_github("cran/SignacX")
Install by package version:
library("remotes")
install_version("SignacX", "2.2.5")
Attach the package and use:
library("SignacX")
Maintained by
Mathew Chamberlain
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.SignacX . https://github.com/mathewchamberlain/SignacX/issues . https://github.com/mathewchamberlain/SignacX . SignacX citation info . SignacX results . SignacX.pdf . Benchmarking SignacX and SingleR with flow-sorted data . SignacX_2.2.5.tar.gz . SignacX_2.2.5.zip . SignacX_2.2.5.zip . SignacX_2.2.5.zip . SignacX_2.2.5.tgz . SignacX_2.2.5.tgz . SignacX_2.2.5.tgz . SignacX_2.2.5.tgz . SignacX archive . https://CRAN.R-project.org/package=SignacX .
First Published: 2021-03-01
Latest Update: 2021-11-18
Description:
An implementation of neural networks trained with flow-sorted gene expression data to classify cellular phenotypes in single cell RNA-sequencing data. See Chamberlain M et al. (2021) <doi:10.1101/2021.02.01.429207> for more details.
How to cite:
Mathew Chamberlain (2021). SignacX: Cell Type Identification and Discovery from Single Cell Gene Expression Data. R package version 2.2.5, https://cran.r-project.org/web/packages/SignacX. Accessed 30 Apr. 2025.
Previous versions and publish date:
Other packages that cited SignacX R package
View SignacX citation profile
Other R packages that SignacX depends,
imports, suggests or enhances
Complete documentation for SignacX
Functions, R codes and Examples using
the SignacX R package
Some associated functions: CID.GetDistMat . CID.IsUnique . CID.LoadData . CID.LoadEdges . CID.Louvain . CID.Normalize . CID.entropy . CID.smooth . CID.writeJSON . GenerateLabels . Genes_Of_Interest . GetModels_HPCA . GetTrainingData_HPCA . KSoftImpute . MASC . ModelGenerator . SaveCountsToH5 . Signac . SignacBoot . SignacFast . get_colors .
Some associated R codes: KSoftImpute.R . MASC.R . ModelGenerator.R . Signac.R . SignacFast.R . data.R . helper_functions.R . Full SignacX package functions and examples
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