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SigTree  

Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree
View on CRAN: Click here


Download and install SigTree package within the R console
Install from CRAN:
install.packages("SigTree")

Install from Github:
library("remotes")
install_github("cran/SigTree")

Install by package version:
library("remotes")
install_version("SigTree", "1.10.6")



Attach the package and use:
library("SigTree")
Maintained by
John R. Stevens
[Scholar Profile | Author Map]
First Published: 2013-08-15
Latest Update: 2017-10-02
Description:
Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.
How to cite:
John R. Stevens (2013). SigTree: Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree. R package version 1.10.6, https://cran.r-project.org/web/packages/SigTree. Accessed 18 Apr. 2025.
Previous versions and publish date:
1.3 (2013-08-15 06:57), 1.4 (2013-12-28 06:59), 1.5 (2014-05-24 08:54), 1.6 (2014-07-16 01:25), 1.7 (2014-12-10 21:43), 1.10.2 (2015-07-19 00:51), 1.10.3 (2016-02-06 11:07), 1.10.4 (2017-01-20 00:01), 1.10.5 (2017-02-08 01:28)
Other packages that cited SigTree R package
View SigTree citation profile
Other R packages that SigTree depends, imports, suggests or enhances
Complete documentation for SigTree
Functions, R codes and Examples using the SigTree R package
Some associated functions: SigTree-package . SigTree.other . adonis.tree . export.figtree . export.inherit . p2.p1 . plotSigTree . 
Some associated R codes: SigTree.other.R . adonis.tree.R . export.figtree.R . export.inherit.R . p2.p1.R . plotSigTree.R .  Full SigTree package functions and examples
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