Other packages > Find by keyword >

SiPhyNetwork  

A Phylogenetic Simulator for Reticulate Evolution
View on CRAN: Click here


Download and install SiPhyNetwork package within the R console
Install from CRAN:
install.packages("SiPhyNetwork")

Install from Github:
library("remotes")
install_github("cran/SiPhyNetwork")

Install by package version:
library("remotes")
install_version("SiPhyNetwork", "1.1.0")



Attach the package and use:
library("SiPhyNetwork")
Maintained by
Joshua Justison
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-20
Latest Update: 2023-04-14
Description:
A simulator for reticulate evolution under a birth-death-hybridization process. Here the birth-death process is extended to consider reticulate Evolution by allowing hybridization events to occur. The general purpose simulator allows the modeling of three different reticulate patterns: lineage generative hybridization, lineage neutral hybridization, and lineage degenerative hybridization. Users can also specify hybridization events to be dependent on a trait value or genetic distance. We also extend some phylogenetic tree utility and plotting functions for networks. We allow two different stopping conditions: simulated to a fixed time or number of taxa. When simulating to a fixed number of taxa, the user can simulate under the Generalized Sampling Approach that properly simulates phylogenies when assuming a uniform prior on the root age.
How to cite:
Joshua Justison (2022). SiPhyNetwork: A Phylogenetic Simulator for Reticulate Evolution. R package version 1.1.0, https://cran.r-project.org/web/packages/SiPhyNetwork. Accessed 07 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:25), 1.0.0 (2022-09-20 11:16), 1.0.1 (2022-09-29 12:50)
Other packages that cited SiPhyNetwork R package
View SiPhyNetwork citation profile
Other R packages that SiPhyNetwork depends, imports, suggests or enhances
Complete documentation for SiPhyNetwork
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

bbricks  
Bayesian Methods and Graphical Model Structures for Statistical Modeling
A set of frequently used Bayesian parametric and nonparametric model structures, as well as a set of ...
Download / Learn more Package Citations See dependency  
BayesESS  
Determining Effective Sample Size
Determines effective sample size of a parametric prior distribution in Bayesian models. For a web-b ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
modelwordcloud  
Model Word Clouds
Makes a word cloud of text, sized by the frequency of the word, and colored either by user-specified ...
Download / Learn more Package Citations See dependency  
enrichwith  
Methods to Enrich R Objects with Extra Components
Provides the "enrich" method to enrich list-like R objects with new, relevant components. The curren ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,752

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA