R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
SiPhyNetwork
View on CRAN: Click
here
Download and install SiPhyNetwork package within the R console
Install from CRAN:
install.packages("SiPhyNetwork")
Install from Github:
library("remotes")
install_github("cran/SiPhyNetwork") Install by package version:
library("remotes")
install_version("SiPhyNetwork", "1.1.0") Attach the package and use:
library("SiPhyNetwork")
Maintained by
Joshua Justison
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-09-20
Latest Update: 2023-04-14
Description:
A simulator for reticulate evolution under a birth-death-hybridization process. Here the birth-death process is extended to consider reticulate Evolution by allowing hybridization events to occur. The general purpose simulator allows the modeling of three different reticulate patterns: lineage generative hybridization, lineage neutral hybridization, and lineage degenerative hybridization. Users can also specify hybridization events to be dependent on a trait value or genetic distance. We also extend some phylogenetic tree utility and plotting functions for networks. We allow two different stopping conditions: simulated to a fixed time or number of taxa. When simulating to a fixed number of taxa, the user can simulate under the Generalized Sampling Approach that properly simulates phylogenies when assuming a uniform prior on the root age.
How to cite:
Joshua Justison (2022). SiPhyNetwork: A Phylogenetic Simulator for Reticulate Evolution. R package version 1.1.0, https://cran.r-project.org/web/packages/SiPhyNetwork. Accessed 07 Aug. 2026.
Previous versions and publish date:
Other packages that cited SiPhyNetwork R package
View SiPhyNetwork citation profile
Other R packages that SiPhyNetwork depends,
imports, suggests or enhances
Complete documentation for SiPhyNetwork
Functions, R codes and Examples using
the SiPhyNetwork R package
Some associated functions: biconnectedComponents . deleteTips . getNetworkLevel . incompleteSampling . isFUstable . isNormal . isTreeBased . isTreeChild . ltt.network . make.beta.draw . make.categorical.draw . make.exp.decay . make.linear.decay . make.polynomial.decay . make.stepwise . make.trait.model . make.uniform.draw . network.gsa . plottable.net . read.net . reconstructedNetwork . sim.bdh.age . sim.bdh.taxa.gsa . sim.bdh.taxa.ssa . write.net .
Some associated R codes: NetworkSim.R . RcppExports.R . SiPhyNetwork-package.R . make.functions.R . network.gsa.R . read.net.R . sim.bdh.age.R . sim.bdh.age.help.R . sim.bdh.taxa.R . sim.bdh.taxa.help.R . utils.R . write.net.R . Full SiPhyNetwork package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
bbricks
A set of frequently used Bayesian parametric and nonparametric model structures, as well as a set of ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Haotian Chen (view profile)
BayesESS
Determines effective sample size of a parametric prior distribution
in Bayesian models. For a web-b ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jaejoon Song (view profile)
r2resize
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
modelwordcloud
Makes a word cloud of text, sized by the frequency of the word, and colored either by user-specified ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Peter Hurford (view profile)
enrichwith
Provides the "enrich" method to enrich list-like R objects with new, relevant components. The curren ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Ioannis Kosmidis (view profile)
28,083
R Packages
239,283
Dependencies
74,752
Author Associations
28,084
Publication Badges
