Other packages > Find by keyword >

SiFINeT  

Single Cell Feature Identification with Network Topology
View on CRAN: Click here


Download and install SiFINeT package within the R console
Install from CRAN:
install.packages("SiFINeT")

Install from Github:
library("remotes")
install_github("cran/SiFINeT")

Install by package version:
library("remotes")
install_version("SiFINeT", "1.13")



Attach the package and use:
library("SiFINeT")
Maintained by
Qi Gao
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-01-20
Latest Update: 2025-01-16
Description:
Cluster-independent method based on topology structure of gene co-expression network for identifying feature gene sets, extracting cellular subpopulations, and elucidating intrinsic relationships among these subpopulations. Without prior cell clustering, SifiNet circumvents potential inaccuracies in clustering that may influence subsequent analyses. This method is introduced in Qi Gao, Zhicheng Ji, Liuyang Wang, Kouros Owzar, Qi-Jing Li, Cliburn Chan, Jichun Xie "SifiNet: a robust and accurate method to identify feature gene sets and annotate cells" (2024) <doi:10.1093/nar/gkae307>.
How to cite:
Qi Gao (2025). SiFINeT: Single Cell Feature Identification with Network Topology. R package version 1.13, https://cran.r-project.org/web/packages/SiFINeT. Accessed 28 Aug. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited SiFINeT R package
View SiFINeT citation profile
Other R packages that SiFINeT depends, imports, suggests or enhances
Complete documentation for SiFINeT
Functions, R codes and Examples using the SiFINeT R package
Full SiFINeT package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

spatialCovariance  
Computation of Spatial Covariance Matrices for Data on Rectangles
Functions that compute the spatial covariance matrix for the matern and power classes of spatial mod ...
Download / Learn more Package Citations See dependency  
shinyFeedback  
Display User Feedback in Shiny Apps
Easily display user feedback in Shiny apps. ...
Download / Learn more Package Citations See dependency  
RGIFT  
Create Quizzes in GIFT Format
Implementation of some functions to create quizzes in the GIFT format. This format is used by sever ...
Download / Learn more Package Citations See dependency  
NPflow  
Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data
Dirichlet process mixture of multivariate normal, skew normal or skew t-distributions modeling orie ...
Download / Learn more Package Citations See dependency  
mxnorm  
Apply Normalization Methods to Multiplexed Images
Implements methods to normalize multiplexed imaging data, including statistical metrics and visuali ...
Download / Learn more Package Citations See dependency  
survivalMPLdc  
Penalised Likelihood for Survival Analysis with Dependent Censoring
Fitting Cox proportional hazard model under dependent right censoring using copula and maximum penal ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA