R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
Seurat
View on CRAN: Click
here
Download and install Seurat package within the R console
Install from CRAN:
install.packages("Seurat")
Install from Github:
library("remotes")
install_github("cran/Seurat") Install by package version:
library("remotes")
install_version("Seurat", "5.4.0") Attach the package and use:
library("Seurat")
Maintained by
Rahul Satija
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-08-22
Latest Update: 2025-04-23
Description:
A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) , Macosko E, Basu A, Satija R, et al (2015) , Stuart T, Butler A, et al (2019) , and Hao, Hao, et al (2020) for more details.
How to cite:
Rahul Satija (2017). Seurat: Tools for Single Cell Genomics. R package version 5.4.0, https://cran.r-project.org/web/packages/Seurat. Accessed 24 Jun. 2026.
Previous versions and publish date:
2.0.1 (2017-08-22 16:57), 2.1.0 (2017-10-12 22:36), 2.2.0 (2018-01-10 22:46), 2.2.1 (2018-02-14 20:53), 2.3.0 (2018-03-23 09:49), 2.3.1 (2018-05-05 08:29), 2.3.2 (2018-06-12 18:09), 2.3.3 (2018-07-03 00:10), 2.3.4 (2018-07-20 10:14), 3.0.0 (2019-04-15 23:54), 3.0.1 (2019-05-16 18:21), 3.0.2 (2019-06-15 00:33), 3.1.0 (2019-08-20 23:40), 3.1.1 (2019-10-03 14:40), 3.1.2 (2019-12-12 23:20), 3.1.3 (2020-02-11 22:40), 3.1.4 (2020-02-26 20:00), 3.1.5 (2020-04-16 13:50), 3.2.0 (2020-07-16 06:30), 3.2.1 (2020-09-07 12:20), 3.2.2 (2020-09-26 06:30), 3.2.3 (2020-12-15 11:10), 4.0.0 (2021-01-30 01:00), 4.0.1 (2021-03-18 07:30), 4.0.2 (2021-05-21 00:00), 4.0.3 (2021-06-10 23:20), 4.0.4 (2021-08-20 21:10), 4.0.5 (2021-10-17 22:30), 4.0.6 (2021-12-16 18:00), 4.1.0 (2022-01-14 19:32), 4.1.1 (2022-05-02 07:40), 4.2.0 (2022-09-22 00:50), 4.2.1 (2022-11-08 01:00), 4.3.0.1 (2023-06-22 09:04), 4.3.0 (2022-11-19 00:30), 4.4.0 (2023-09-28 10:50), 5.0.0 (2023-11-04 06:30), 5.0.1 (2023-11-18 00:10), 5.0.2 (2024-02-29 01:20), 5.0.3 (2024-03-19 00:40), 5.1.0 (2024-05-10 19:23), 5.2.0 (2025-01-14 00:20), 5.2.1 (2025-01-24 07:50), 5.3.0 (2025-04-24 00:10), 5.3.1 (2025-10-29 11:10), 5.4.0 (2025-12-14 08:20)
Other packages that cited Seurat R package
View Seurat citation profile
Other R packages that Seurat depends,
imports, suggests or enhances
Complete documentation for Seurat
Functions, R codes and Examples using
the Seurat R package
Some associated functions: AddAzimuthResults . AddAzimuthScores . AddModuleScore . AggregateExpression . AnchorSet-class . AnnotateAnchors . Assay-class . AugmentPlot . AutoPointSize . AverageExpression . BGTextColor . BarcodeInflectionsPlot . BuildClusterTree . CalcPerturbSig . CalculateBarcodeInflections . CaseMatch . CellCycleScoring . CellScatter . CellSelector . Cells . CellsByImage . CollapseEmbeddingOutliers . CollapseSpeciesExpressionMatrix . ColorDimSplit . CombinePlots . CreateSCTAssayObject . CustomDistance . CustomPalette . DEenrichRPlot . DietSeurat . DimHeatmap . DimPlot . DimReduc-class . DiscretePalette . DoHeatmap . DotPlot . ElbowPlot . ExpMean . ExpSD . ExpVar . FastRowScale . FeaturePlot . FeatureScatter . FilterSlideSeq . FindAllMarkers . FindClusters . FindConservedMarkers . FindIntegrationAnchors . FindMarkers . FindMultiModalNeighbors . FindNeighbors . FindSpatiallyVariableFeatures . FindSubCluster . FindTransferAnchors . FindVariableFeatures . FoldChange . GetAssay . GetImage . GetIntegrationData . GetResidual . GetTissueCoordinates . GetTransferPredictions . Graph-class . GroupCorrelation . GroupCorrelationPlot . HTODemux . HTOHeatmap . HVFInfo.SCTAssay . HoverLocator . IFeaturePlot . ISpatialDimPlot . ISpatialFeaturePlot . ImageDimPlot . ImageFeaturePlot . IntegrateData . IntegrateEmbeddings . IntegrationAnchorSet-class . IntegrationData-class . JackStraw . JackStrawData-class . JackStrawPlot . L2CCA . L2Dim . LabelClusters . LabelPoints . LinkedPlots . Load10X_Spatial . LoadAnnoyIndex . LoadSTARmap . LocalStruct . LogNormalize . LogVMR . MULTIseqDemux . MapQuery . MappingScore . MetaFeature . MinMax . MixingMetric . MixscapeHeatmap . MixscapeLDA . ModalityWeights-class . NNPlot . Neighbor-class . NormalizeData . PCASigGenes . PercentAbove . PercentageFeatureSet . PlotClusterTree . PlotPerturbScore . PolyDimPlot . PolyFeaturePlot . PredictAssay . PrepLDA . PrepSCTFindMarkers . PrepSCTIntegration . ProjectDim . ProjectUMAP . Radius . Read10X . Read10X_Image . Read10X_h5 . ReadAkoya . ReadMtx . ReadNanostring . ReadParseBio . ReadSTARsolo . ReadSlideSeq . ReadVitessce . ReadVizgen . ReadXenium . RegroupIdents . RelativeCounts . RenameCells . RidgePlot . RunCCA . RunICA . RunLDA . RunMarkVario . RunMixscape . RunMoransI . RunPCA . RunSLSI . RunSPCA . RunTSNE . RunUMAP . SCTAssay-class . SCTResults . SCTransform . STARmap-class . SampleUMI . SaveAnnoyIndex . ScaleData . ScaleFactors . ScoreJackStraw . SelectIntegrationFeatures . SetIntegrationData . SetQuantile . Seurat-class . Seurat-package . SeuratCommand-class . SeuratTheme . SingleCorPlot . SingleDimPlot . SingleExIPlot . SingleImageMap . SingleImagePlot . SingleRasterMap . SingleSpatialPlot . SlideSeq-class . SpatialImage-class . SpatialPlot . SplitObject . SubsetByBarcodeInflections . TopCells . TopFeatures . TopNeighbors . TransferAnchorSet-class . TransferData . UpdateSCTAssays . UpdateSymbolList . VariableFeaturePlot . VisiumV1-class . VizDimLoadings . VlnPlot . as.CellDataSet . as.Seurat . as.SingleCellExperiment . as.sparse . cc.genes . cc.genes.updated.2019 . contrast-theory . fortify-Spatial . merge.SCTAssay . reexports . subset.AnchorSet .
Some associated R codes: RcppExports.R . clustering.R . convenience.R . data.R . differential_expression.R . dimensional_reduction.R . generics.R . integration.R . mixscape.R . objects.R . preprocessing.R . reexports.R . tree.R . utilities.R . visualization.R . zzz.R . Full Seurat package functions and examples
Downloads during the last 30 days
Today's Hot Picks in Authors and Packages
rdataretriever
Provides an R interface to the Data Retriever
via the ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Henry Senyondo (view profile)
imagefx
Synthesize images into characteristic features for time-series analysis or machine learning applicat ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Alex J.C. Witsil (view profile)
ggrisk
The risk plot may be one of the most commonly used figures in
tumor genetic data analysis. We can c ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jing Zhang (view profile)
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
wildlifeDI
Dynamic interaction refers to spatial-temporal associations in the movements of two (or more) animal ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Jed Long (view profile)
27,535
R Packages
236,180
Dependencies
73,223
Author Associations
27,484
Publication Badges
