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SeqKat  

Detection of Kataegis
View on CRAN: Click here


Download and install SeqKat package within the R console
Install from CRAN:
install.packages("SeqKat")

Install from Github:
library("remotes")
install_github("cran/SeqKat")

Install by package version:
library("remotes")
install_version("SeqKat", "0.0.8")



Attach the package and use:
library("SeqKat")
Maintained by
Paul C. Boutros
[Scholar Profile | Author Map]
First Published: 2017-06-25
Latest Update: 2020-03-11
Description:
Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 .
How to cite:
Paul C. Boutros (2017). SeqKat: Detection of Kataegis. R package version 0.0.8, https://cran.r-project.org/web/packages/SeqKat. Accessed 21 Apr. 2025.
Previous versions and publish date:
0.0.4 (2017-06-25 09:10), 0.0.6 (2018-03-29 23:57)
Other packages that cited SeqKat R package
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Other R packages that SeqKat depends, imports, suggests or enhances
Complete documentation for SeqKat
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