Other packages > Find by keyword >

SeqKat  

Detection of Kataegis
View on CRAN: Click here


Download and install SeqKat package within the R console
Install from CRAN:
install.packages("SeqKat")

Install from Github:
library("remotes")
install_github("cran/SeqKat")

Install by package version:
library("remotes")
install_version("SeqKat", "0.0.8")



Attach the package and use:
library("SeqKat")
Maintained by
Paul C. Boutros
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-06-25
Latest Update: 2020-03-11
Description:
Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 .
How to cite:
Paul C. Boutros (2017). SeqKat: Detection of Kataegis. R package version 0.0.8, https://cran.r-project.org/web/packages/SeqKat. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:25), 0.0.4 (2017-06-25 09:10), 0.0.6 (2018-03-29 23:57), 0.0.8 (2020-03-11 01:40)
Other packages that cited SeqKat R package
View SeqKat citation profile
Other R packages that SeqKat depends, imports, suggests or enhances
Complete documentation for SeqKat
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA