Other packages > Find by keyword >

SeqKat  

Detection of Kataegis
View on CRAN: Click here


Download and install SeqKat package within the R console
Install from CRAN:
install.packages("SeqKat")

Install from Github:
library("remotes")
install_github("cran/SeqKat")

Install by package version:
library("remotes")
install_version("SeqKat", "0.0.9")



Attach the package and use:
library("SeqKat")
Maintained by
Paul C. Boutros
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-06-25
Latest Update: 2020-03-11
Description:
Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 .
How to cite:
Paul C. Boutros (2017). SeqKat: Detection of Kataegis. R package version 0.0.9, https://cran.r-project.org/web/packages/SeqKat. Accessed 29 Oct. 2026.
Previous versions and publish date:
(2026-07-09 08:25), 0.0.4 (2017-06-25 09:10), 0.0.6 (2018-03-29 23:57), 0.0.8 (2020-03-11 01:40)
Other packages that cited SeqKat R package
View SeqKat citation profile
Other R packages that SeqKat depends, imports, suggests or enhances
Complete documentation for SeqKat
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

binovisualfields  
Depth-Dependent Binocular Visual Fields Simulation
Simulation and visualization depth-dependent integrated visual fields. Visual fields are measured mo ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
personalized2part  
Two-Part Estimation of Treatment Rules for Semi-Continuous Data
Implements the methodology of Huling, Smith, and Chen (2020) , w ...
Download / Learn more Package Citations See dependency  
GEVcdn  
GEV Conditional Density Estimation Network
Implements a flexible nonlinear modelling framework for nonstationary generalized extreme value anal ...
Download / Learn more Package Citations See dependency  
fastRG  
Sample Generalized Random Dot Product Graphs in Linear Time
Samples generalized random product graphs, a generalization of a broad class of network models. Giv ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA