Other packages > Find by keyword >

SeqKat  

Detection of Kataegis
View on CRAN: Click here


Download and install SeqKat package within the R console
Install from CRAN:
install.packages("SeqKat")

Install from Github:
library("remotes")
install_github("cran/SeqKat")

Install by package version:
library("remotes")
install_version("SeqKat", "0.0.8")



Attach the package and use:
library("SeqKat")
Maintained by
Paul C. Boutros
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-06-25
Latest Update: 2020-03-11
Description:
Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 .
How to cite:
Paul C. Boutros (2017). SeqKat: Detection of Kataegis. R package version 0.0.8, https://cran.r-project.org/web/packages/SeqKat. Accessed 05 Mar. 2026.
Previous versions and publish date:
0.0.4 (2017-06-25 09:10), 0.0.6 (2018-03-29 23:57), 0.0.8 (2020-03-11 01:40)
Other packages that cited SeqKat R package
View SeqKat citation profile
Other R packages that SeqKat depends, imports, suggests or enhances
Complete documentation for SeqKat
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ClimClass  
Climate Classification According to Several Indices
Classification of climate according to Koeppen - Geiger, of aridity indices, of continentality indi ...
Download / Learn more Package Citations See dependency  
diffIRT  
Diffusion IRT Models for Response and Response Time Data
Package to fit diffusion-based IRT models to response and response time data. Models are fit using ...
Download / Learn more Package Citations See dependency  
imagefx  
Extract Features from Images
Synthesize images into characteristic features for time-series analysis or machine learning applicat ...
Download / Learn more Package Citations See dependency  
pinp  
'pinp' is not 'PNAS'
A 'PNAS'-alike style for 'rmarkdown', derived from the 'Proceedings of the National Academy of Scie ...
Download / Learn more Package Citations See dependency  
roccv  
ROC for Cross Validation Results
Cross validate large genetic data while specifying clinical variables that should always be in the m ...
Download / Learn more Package Citations See dependency  
neat  
Efficient Network Enrichment Analysis Test
Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in ...
Download / Learn more Package Citations See dependency  

26,264

R Packages

223,360

Dependencies

70,244

Author Associations

26,265

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA