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SeqFeatR
View on CRAN: Click
here
Download and install SeqFeatR package within the R console
Install from CRAN:
install.packages("SeqFeatR")
Install from Github:
library("remotes")
install_github("cran/SeqFeatR")
Install by package version:
library("remotes")
install_version("SeqFeatR", "0.3.1")
Attach the package and use:
library("SeqFeatR")
Maintained by
Bettina Budeus
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-06-10
Latest Update: 2019-04-12
Description:
Provides user friendly methods for the identification of sequence patterns that are statistically significantly associated with a property of the sequence. For instance, SeqFeatR allows to identify viral immune escape mutations for hosts of given HLA types. The underlying statistical method is Fisher's exact test, with appropriate corrections for multiple testing, or Bayes. Patterns may be point mutations or n-tuple of mutations. SeqFeatR offers several ways to visualize the results of the statistical analyses, see Budeus (2016) .
How to cite:
Bettina Budeus (2014). SeqFeatR: A Tool to Associate FASTA Sequences and Features. R package version 0.3.1, https://cran.r-project.org/web/packages/SeqFeatR
Previous versions and publish date:
Other packages that cited SeqFeatR R package
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Other R packages that SeqFeatR depends,
imports, suggests or enhances
Functions, R codes and Examples using
the SeqFeatR R package
Some associated functions: SeqFeatR_GUI . assocpair . assocpairfeat . assocpoint . assocpointhierarchical . assocpointpair . assoctuple . comparewithancestral . foundereffectfinder . getfreqs . orPlot . q-values . rewritetuple . smallmanhattan . tartan . visualizepair . visualizepairfeat . volcanoplot .
Some associated R codes: SeqFeatR_GUI.R . assocpair.R . assocpairfeat.R . assocpoint.R . assocpointhierarchical.R . assocpointpair.R . assoctuple.R . comparewithancestral.R . foundereffectfinder.R . getfreqs.R . orPlot.R . q-values.R . rewritetuple.R . smallmanhattan.R . tartan.R . visualizepair.R . visualizepairfeat.R . volcanoplot.R . Full SeqFeatR package functions and examples
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