Other packages > Find by keyword >

SeqFeatR  

A Tool to Associate FASTA Sequences and Features
View on CRAN: Click here


Download and install SeqFeatR package within the R console
Install from CRAN:
install.packages("SeqFeatR")

Install from Github:
library("remotes")
install_github("cran/SeqFeatR")

Install by package version:
library("remotes")
install_version("SeqFeatR", "0.3.1")



Attach the package and use:
library("SeqFeatR")
Maintained by
Bettina Budeus
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-06-10
Latest Update: 2019-04-12
Description:
Provides user friendly methods for the identification of sequence patterns that are statistically significantly associated with a property of the sequence. For instance, SeqFeatR allows to identify viral immune escape mutations for hosts of given HLA types. The underlying statistical method is Fisher's exact test, with appropriate corrections for multiple testing, or Bayes. Patterns may be point mutations or n-tuple of mutations. SeqFeatR offers several ways to visualize the results of the statistical analyses, see Budeus (2016) .
How to cite:
Bettina Budeus (2014). SeqFeatR: A Tool to Associate FASTA Sequences and Features. R package version 0.3.1, https://cran.r-project.org/web/packages/SeqFeatR. Accessed 10 Nov. 2026.
Previous versions and publish date:
(2026-07-09 08:25), 0.1.5 (2014-06-10 12:19), 0.1.7 (2015-02-11 10:39), 0.2.0 (2015-08-20 11:59), 0.2.2 (2016-03-25 00:18), 0.2.3 (2016-05-25 11:17), 0.2.4 (2016-10-17 12:41), 0.2.6 (2018-03-06 10:12), 0.2.7 (2018-05-18 11:40), 0.3.1 (2019-04-12 14:02), 0.3.3 (2026-02-13 10:50), 0.3 (2018-11-30 14:30)
Other packages that cited SeqFeatR R package
View SeqFeatR citation profile
Other R packages that SeqFeatR depends, imports, suggests or enhances
Complete documentation for SeqFeatR
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

MazamaSpatialUtils  
Spatial Data Download and Utility Functions
A suite of conversion functions to create internally standardized spatial polygons data frames. Uti ...
Download / Learn more Package Citations See dependency  
CNLTtsa  
Complex-Valued Wavelet Lifting for Univariate and Bivariate Time Series Analysis
Implementations of recent complex-valued wavelet spectral procedures for analysis of irregularly sam ...
Download / Learn more Package Citations See dependency  
rbooster  
AdaBoost Framework for Any Classifier
This is a simple package which provides a function that boosts pre-ready or custom-made classifiers ...
Download / Learn more Package Citations See dependency  
cosinor2  
Extended Tools for Cosinor Analysis of Rhythms
Statistical procedures for calculating population ...
Download / Learn more Package Citations See dependency  
OBIC  
Calculate the Open Bodem Index (OBI) Score
The Open Bodem Index (OBI) is a method to evaluate the quality of soils of agricultural fields in Th ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

29,369

R Packages

247,686

Dependencies

77,665

Author Associations

29,370

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA