Other packages > Find by keyword >

SeqFeatR  

A Tool to Associate FASTA Sequences and Features
View on CRAN: Click here


Download and install SeqFeatR package within the R console
Install from CRAN:
install.packages("SeqFeatR")

Install from Github:
library("remotes")
install_github("cran/SeqFeatR")

Install by package version:
library("remotes")
install_version("SeqFeatR", "0.3.1")



Attach the package and use:
library("SeqFeatR")
Maintained by
Bettina Budeus
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-06-10
Latest Update: 2019-04-12
Description:
Provides user friendly methods for the identification of sequence patterns that are statistically significantly associated with a property of the sequence. For instance, SeqFeatR allows to identify viral immune escape mutations for hosts of given HLA types. The underlying statistical method is Fisher's exact test, with appropriate corrections for multiple testing, or Bayes. Patterns may be point mutations or n-tuple of mutations. SeqFeatR offers several ways to visualize the results of the statistical analyses, see Budeus (2016) .
How to cite:
Bettina Budeus (2014). SeqFeatR: A Tool to Associate FASTA Sequences and Features. R package version 0.3.1, https://cran.r-project.org/web/packages/SeqFeatR. Accessed 29 Sep. 2026.
Previous versions and publish date:
(2026-07-09 08:25), 0.1.5 (2014-06-10 12:19), 0.1.7 (2015-02-11 10:39), 0.2.0 (2015-08-20 11:59), 0.2.2 (2016-03-25 00:18), 0.2.3 (2016-05-25 11:17), 0.2.4 (2016-10-17 12:41), 0.2.6 (2018-03-06 10:12), 0.2.7 (2018-05-18 11:40), 0.3.1 (2019-04-12 14:02), 0.3.3 (2026-02-13 10:50), 0.3 (2018-11-30 14:30)
Other packages that cited SeqFeatR R package
View SeqFeatR citation profile
Other R packages that SeqFeatR depends, imports, suggests or enhances
Complete documentation for SeqFeatR
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

CopSens  
Copula-Based Sensitivity Analysis for Observational Causal Inference
Implements the copula-based sensitivity analysis method, as discussed in Copula-based Sensitivity A ...
Download / Learn more Package Citations See dependency  
PMCMRplus  
Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended
For one-way layout experiments the one-way ANOVA can be performed as an omnibus test. All-pairs mul ...
Download / Learn more Package Citations See dependency  
miniMeta  
Web Application to Run Meta-Analyses
Shiny web application to run meta-analyses. Essentially a graphical front-end to package 'meta' for ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
uniswappeR  
Interact with the Uniswap Platform
Routines to interact with the Uniswap trading platform and its API < ...
Download / Learn more Package Citations See dependency  
FRESA.CAD  
Feature Selection Algorithms for Computer Aided Diagnosis
Contains a set of utilities for building and testing statistical models (linear, logistic,ordinal or ...
Download / Learn more Package Citations See dependency  

28,833

R Packages

247,686

Dependencies

76,198

Author Associations

28,834

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA