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STREAK
View on CRAN: Click
here
Download and install STREAK package within the R console
Install from CRAN:
install.packages("STREAK")
Install from Github:
library("remotes")
install_github("cran/STREAK") Install by package version:
library("remotes")
install_version("STREAK", "1.0.0") Attach the package and use:
library("STREAK")
Maintained by
Azka Javaid
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[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-29
Latest Update: 2023-11-17
Description:
Performs receptor abundance estimation for single cell RNA-sequencing data using a supervised feature selection mechanism and a thresholded gene set scoring procedure. Seurat's normalization method is described in: Hao et al., (2021) <doi:10.1016/j.cell.2021.04.048>, Stuart et al., (2019) <doi:10.1016/j.cell.2019.05.031>, Butler et al., (2018) <doi:10.1038/nbt.4096> and Satija et al., (2015) <doi:10.1038/nbt.3192>. Method for reduced rank reconstruction and rank-k selection is detailed in: Javaid et al., (2022) <doi:10.1101/2022.10.08.511197>. Gene set scoring procedure is described in: Frost et al., (2020) <doi:10.1093/nar/gkaa582>. Clustering method is outlined in: Song et al., (2020) <doi:10.1093/bioinformatics/btaa613> and Wang et al., (2011) <doi:10.32614/RJ-2011-015>.
How to cite:
Azka Javaid (2022). STREAK: Receptor Abundance Estimation using Feature Selection and Gene Set Scoring. R package version 1.0.0, https://cran.r-project.org/web/packages/STREAK. Accessed 07 Mar. 2026.
Previous versions and publish date:
0.1.0 (2022-11-29 11:30)
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Other R packages that STREAK depends,
imports, suggests or enhances
Complete documentation for STREAK
Functions, R codes and Examples using
the STREAK R package
Some associated functions: STREAK-package . receptorAbundanceEstimation . receptorGeneSetConstruction . target.malt.rna.mat . train.malt.adt.mat . train.malt.rna.mat .
Some associated R codes: ReceptorAbundanceEstimation.R . ReceptorGeneSetConstruction.R . STREAK-package.R . data.R . Full STREAK package functions and examples
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