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STREAK  

Receptor Abundance Estimation using Feature Selection and Gene Set Scoring
View on CRAN: Click here


Download and install STREAK package within the R console
Install from CRAN:
install.packages("STREAK")

Install from Github:
library("remotes")
install_github("cran/STREAK")

Install by package version:
library("remotes")
install_version("STREAK", "1.0.0")



Attach the package and use:
library("STREAK")
Maintained by
Azka Javaid
[Scholar Profile | Author Map]
First Published: 2022-11-29
Latest Update: 2023-11-17
Description:
Performs receptor abundance estimation for single cell RNA-sequencing data using a supervised feature selection mechanism and a thresholded gene set scoring procedure. Seurat's normalization method is described in: Hao et al., (2021) <doi:10.1016/j.cell.2021.04.048>, Stuart et al., (2019) <doi:10.1016/j.cell.2019.05.031>, Butler et al., (2018) <doi:10.1038/nbt.4096> and Satija et al., (2015) <doi:10.1038/nbt.3192>. Method for reduced rank reconstruction and rank-k selection is detailed in: Javaid et al., (2022) <doi:10.1101/2022.10.08.511197>. Gene set scoring procedure is described in: Frost et al., (2020) <doi:10.1093/nar/gkaa582>. Clustering method is outlined in: Song et al., (2020) <doi:10.1093/bioinformatics/btaa613> and Wang et al., (2011) <doi:10.32614/RJ-2011-015>.
How to cite:
Azka Javaid (2022). STREAK: Receptor Abundance Estimation using Feature Selection and Gene Set Scoring. R package version 1.0.0, https://cran.r-project.org/web/packages/STREAK. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.1.0 (2022-11-29 11:30)
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