R package citation, R package reverse dependencies, R package scholars, install an r package from GitHub hy is package acceptance pending why is package undeliverable amazon why is package on hold dhl tour packages why in r package r and r package full form why is r free why r is bad which r package to install which r package has which r package which r package version which r package readxl which r package ggplot which r package fread which r package license where is package.json where is package-lock.json where is package.swift where is package explorer in eclipse where is package where is package manager unity where is package installer android where is package manager console in visual studio who r package which r package to install which r package version who is package who is package deal who is package design r and r package full form r and r package meaning what r package has what package r what is package in java what is package what is package-lock.json what is package in python what is package.json what is package installer do r package can't install r packages r can't find package r can't load package can't load xlsx package r can't install psych package r can't install sf package r Write if else in NONMEM pk pd
STREAK
View on CRAN: Click
here
Download and install STREAK package within the R console
Install from CRAN:
install.packages("STREAK")
Install from Github:
library("remotes")
install_github("cran/STREAK")
Install by package version:
library("remotes")
install_version("STREAK", "1.0.0")
Attach the package and use:
library("STREAK")
Maintained by
Azka Javaid
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-29
Latest Update: 2023-11-17
Description:
Performs receptor abundance estimation for single cell RNA-sequencing data using a supervised feature selection mechanism and a thresholded gene set scoring procedure. Seurat's normalization method is described in: Hao et al., (2021) <doi:10.1016/j.cell.2021.04.048>, Stuart et al., (2019) <doi:10.1016/j.cell.2019.05.031>, Butler et al., (2018) <doi:10.1038/nbt.4096> and Satija et al., (2015) <doi:10.1038/nbt.3192>. Method for reduced rank reconstruction and rank-k selection is detailed in: Javaid et al., (2022) <doi:10.1101/2022.10.08.511197>. Gene set scoring procedure is described in: Frost et al., (2020) <doi:10.1093/nar/gkaa582>. Clustering method is outlined in: Song et al., (2020) <doi:10.1093/bioinformatics/btaa613> and Wang et al., (2011) <doi:10.32614/RJ-2011-015>.
How to cite:
Azka Javaid (2022). STREAK: Receptor Abundance Estimation using Feature Selection and Gene Set Scoring. R package version 1.0.0, https://cran.r-project.org/web/packages/STREAK
Previous versions and publish date:
0.1.0 (2022-11-29 11:30)
Other packages that cited STREAK R package
View STREAK citation profile
Other R packages that STREAK depends,
imports, suggests or enhances
Functions, R codes and Examples using
the STREAK R package
Some associated functions: STREAK-package . receptorAbundanceEstimation . receptorGeneSetConstruction . target.malt.rna.mat . train.malt.adt.mat . train.malt.rna.mat .
Some associated R codes: ReceptorAbundanceEstimation.R . ReceptorGeneSetConstruction.R . STREAK-package.R . data.R . Full STREAK package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by
helping add
Reviews / comments / questions /suggestions ↴↴↴
Today's Hot Picks in Authors and Packages
nextGenShinyApps
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Obinna Obianom (view profile)
CompoundEvents
Tools for extracting occurrences, assessing potential driving factors, predicting occurrences, and q ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Zengchao Hao (view profile)
MatrixEQTL
Matrix eQTL is designed for fast eQTL analysis on large datasets.
Matrix eQTL can test for associat ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Andrey A Shabalin (view profile)
multiocc
Spatio-temporal multivariate occupancy models can handle multiple species in occupancy models. This ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Staci Hepler (view profile)
gclus
Orders panels in scatterplot matrices and parallel coordinate
displays by some merit index. Package ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: Catherine Hurley (view profile)
stagePop
Provides facilities to implement and run population models of stage-structured species... ...
Download / Learn more Package Citations See dependency
Download / Learn more Package Citations See dependency
Maintainer: David Nutter (view profile)
22,114
R Packages
188,080
Dependencies
55,244
Author Associations
22,115
Publication Badges
© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns