Other packages > Find by keyword >

STREAK  

Receptor Abundance Estimation using Feature Selection and Gene Set Scoring
View on CRAN: Click here


Download and install STREAK package within the R console
Install from CRAN:
install.packages("STREAK")

Install from Github:
library("remotes")
install_github("cran/STREAK")

Install by package version:
library("remotes")
install_version("STREAK", "1.0.0")



Attach the package and use:
library("STREAK")
Maintained by
Azka Javaid
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-11-29
Latest Update: 2023-11-17
Description:
Performs receptor abundance estimation for single cell RNA-sequencing data using a supervised feature selection mechanism and a thresholded gene set scoring procedure. Seurat's normalization method is described in: Hao et al., (2021) <doi:10.1016/j.cell.2021.04.048>, Stuart et al., (2019) <doi:10.1016/j.cell.2019.05.031>, Butler et al., (2018) <doi:10.1038/nbt.4096> and Satija et al., (2015) <doi:10.1038/nbt.3192>. Method for reduced rank reconstruction and rank-k selection is detailed in: Javaid et al., (2022) <doi:10.1101/2022.10.08.511197>. Gene set scoring procedure is described in: Frost et al., (2020) <doi:10.1093/nar/gkaa582>. Clustering method is outlined in: Song et al., (2020) <doi:10.1093/bioinformatics/btaa613> and Wang et al., (2011) <doi:10.32614/RJ-2011-015>.
How to cite:
Azka Javaid (2022). STREAK: Receptor Abundance Estimation using Feature Selection and Gene Set Scoring. R package version 1.0.0, https://cran.r-project.org/web/packages/STREAK. Accessed 06 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:25), 0.1.0 (2022-11-29 11:30)
Other packages that cited STREAK R package
View STREAK citation profile
Other R packages that STREAK depends, imports, suggests or enhances
Complete documentation for STREAK
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  
TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA