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STDistance  

Spatial Transcriptomics Distance Calculation and Visualization
View on CRAN: Click here


Download and install STDistance package within the R console
Install from CRAN:
install.packages("STDistance")

Install from Github:
library("remotes")
install_github("cran/STDistance")

Install by package version:
library("remotes")
install_version("STDistance", "0.6.6")



Attach the package and use:
library("STDistance")
Maintained by
Zixiang Wang
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-06-18
Latest Update: 2025-07-22
Description:
Analysis of spatial relationships between cell types in spatial transcriptomics data. Spatial proximity is a critical factor in cell-cell communication. The package calculates nearest neighbor distances between specified cell types and provides visualization tools to explore spatial patterns. Applications include studying cell-cell interactions, immune microenvironment characterization, and spatial organization of tissues.
How to cite:
Zixiang Wang (2025). STDistance: Spatial Transcriptomics Distance Calculation and Visualization. R package version 0.6.6, https://cran.r-project.org/web/packages/STDistance. Accessed 16 Jul. 2026.
Previous versions and publish date:
(2026-07-09 08:25), 0.6.4 (2025-06-18 13:50), 0.6.6 (2025-07-22 15:00)
Other packages that cited STDistance R package
View STDistance citation profile
Other R packages that STDistance depends, imports, suggests or enhances
Complete documentation for STDistance
Functions, R codes and Examples using the STDistance R package
Full STDistance package functions and examples
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